Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02600 395 / 4e-138 ATLPP3, LPP3 lipid phosphate phosphatase 3 (.1.2.3.4.5) AT2G01180 386 / 6e-135 ATLPP1, ATPAP1 LIPID PHOSPHATE PHOSPHATASE 1, phosphatidic acid phosphatase 1 (.1.2) AT1G15080 344 / 1e-118 ATLPP2, LPP2, ATPAP2 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) AT3G18220 276 / 2e-91 Phosphatidic acid phosphatase (PAP2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035262 [exp] 556 / 0 AT3G02600 429 / 3e-151 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10007933 [exp] 455 / 7e-155 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10009155 [exp] 383 / 1e-131 AT3G02600 488 / 1e-172 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10028489 [exp] 361 / 1e-124 AT3G02600 465 / 1e-166 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10013470 [exp] 350 / 1e-121 AT3G02600 326 / 1e-112 lipid phosphate phosphatase 3 (.1.2.3.4.5) Lus10034629 [exp] 330 / 1e-112 AT1G15080 442 / 4e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10035261 [exp] 326 / 2e-111 AT1G15080 443 / 2e-158 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1) Lus10013469 [exp] 96 / 2e-21 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119400 [exp] 403 / 3e-141 AT3G02600 407 / 9e-143 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.008G124900 [exp] 389 / 8e-136 AT3G02600 420 / 3e-148 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.017G119500 [exp] 380 / 6e-132 AT3G02600 460 / 1e-163 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.004G095400 [exp] 376 / 7e-130 AT3G02600 465 / 1e-164 lipid phosphate phosphatase 3 (.1.2.3.4.5) Potri.010G119300 [exp] 353 / 9e-122 AT1G15080 452 / 1e-161 PHOSPHATIDIC ACID PHOSPHATASE 2, lipid phosphate phosphatase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [flax] [poplar] pap2 PF01569 [flax] [poplar] PAP2 PAP2 superfamily
Representative CDS sequence Show only first row Show all	>Lus10034630 pacid=23162884 polypeptide=Lus10034630 locus=Lus10034630.g ID=Lus10034630.BGIv1.0 annot-version=v1.0 ATGGGTCTGGGTTGGATCCGTGGCATCTTTCAGCGGCAGGAGCAGGAAGAGCAGCAAGGAGGGGGTAGGAGGATGAGAGAAGTGGATCTGGGTGCTCACA CAATCAAAAGCCATGGAGGTAGAGTTGCTAGGAACCATATGTACGATTGGCTCGTATTGGTGTTGCTTGGTGTGGTGGAGATCATTTTGTTAACCATCCA TCCTTTCAATCGGTTCGTGGGCAAGGACATGATGGTTGATATCAGATACCCTCTGAAGGAGAACACCGTCCCCACTTGGTCCATCGCTCTATATGCAGTT CTCTTGCCAATTCTAGTCTTCATTTTCTTCTACTACCGGAGAAGATGTGTCTATGATCTCCACAATGCCATTTTAGATACTCTATACTTCATCATAAGTC TCTTTTTCACCGTAGCAATCACTGCAGTCCTCACCGATGCCATAAAACTTGCGACTGGGAGGCCGAGACCCGACTTCTTCTGGCGTTGCTTCCCTGATGG CAAGGATCTTTATGATCAATTGGGAGACGTAATATGCCATGGCAAAGACAAGGAGATAAGGGAAGGGCATAAGAGCTTCCCCAGTGGCCATGCTTCCTGG TCGTTTGCTGGATTAGGGTTTCTGTCTCTGTATTTGAGTGGGAAGATCAACGTGTTTGACAGGCAAGGTCACGTAGGGAAGCTATGCATTGTGATCTTCC CTCTCCTTGCTGCAGCCCTCGTCGCGATATCCCGAGTTGACGACTATCGACACCATTGGCAGGACGTTTTTGCTGGATCTATTTTAGGACTTGTGGTTGC AACCCTTTGCTACAGACAGTTCTTCCCAGCGCCTTACCACAGTGAAGGATGGGGGCCGTATACATATTTCCAAGCGCTGGAGGACTCACGGTCAGGTGGT CCAAATGATGCTCATAACCACAATAATCATTATAGCAACAATGATAACAACGTTGAAGCTATGGTAGAACGACACGAGCATGTTCGCAGGCCGAATGGAG ATCTTGAATTTACATCGCTAGATCTTGAATCTGGAGGAAGATAA
AA sequence Show only first row Show all	>Lus10034630 pacid=23162884 polypeptide=Lus10034630 locus=Lus10034630.g ID=Lus10034630.BGIv1.0 annot-version=v1.0 MGLGWIRGIFQRQEQEEQQGGGRRMREVDLGAHTIKSHGGRVARNHMYDWLVLVLLGVVEIILLTIHPFNRFVGKDMMVDIRYPLKENTVPTWSIALYAV LLPILVFIFFYYRRRCVYDLHNAILDTLYFIISLFFTVAITAVLTDAIKLATGRPRPDFFWRCFPDGKDLYDQLGDVICHGKDKEIREGHKSFPSGHASW SFAGLGFLSLYLSGKINVFDRQGHVGKLCIVIFPLLAAALVAISRVDDYRHHWQDVFAGSILGLVVATLCYRQFFPAPYHSEGWGPYTYFQALEDSRSGG PNDAHNHNNHYSNNDNNVEAMVERHEHVRRPNGDLEFTSLDLESGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10034630 [exp]	0	1
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10035262 [exp]	3.0	0.8530
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	6.6	0.7787
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	7.2	0.8333
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10001265 [exp]	13.4	0.8168
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030659 [exp]	22.0	0.7998
AT4G36500			unknown protein		Lus10014291 [exp]	23.3	0.8074
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10024643 [exp]	25.0	0.7939
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10026082 [exp]	27.0	0.7799
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	28.7	0.7846
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	28.9	0.7688

Compare expression of checked genes

Lus10034630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.