Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15140 315 / 6e-108 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) AT5G20080 51 / 3e-07 FAD/NAD(P)-binding oxidoreductase (.1) AT5G17770 45 / 4e-05 CBR1, ATCBR NADH:cytochrome B5 reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035265 [exp] 456 / 4e-155 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10013488 [exp] 192 / 6e-62 AT1G15140 244 / 1e-82 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10007955 [exp] 186 / 2e-59 AT1G15140 236 / 2e-79 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10007954 [exp] 143 / 2e-42 AT1G15140 138 / 6e-41 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10014491 [exp] 55 / 2e-08 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 55 / 3e-08 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1) Lus10020310 [exp] 47 / 6e-06 AT5G17770 474 / 5e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10005682 [exp] 46 / 2e-05 AT5G17770 474 / 6e-171 NADH:cytochrome B5 reductase 1 (.1) Lus10008407 [exp] 46 / 2e-05 AT5G17770 427 / 4e-152 NADH:cytochrome B5 reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116500 [exp] 344 / 4e-119 AT1G15140 368 / 1e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Potri.008G126700 [exp] 339 / 1e-117 AT1G15140 395 / 9e-140 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Potri.004G194400 [exp] 50 / 6e-07 AT5G17770 428 / 4e-153 NADH:cytochrome B5 reductase 1 (.1) Potri.010G246800 [exp] 50 / 9e-07 AT5G17770 379 / 1e-133 NADH:cytochrome B5 reductase 1 (.1) Potri.013G067300 [exp] 47 / 5e-06 AT5G17770 461 / 6e-166 NADH:cytochrome B5 reductase 1 (.1) Potri.009G157000 [exp] 47 / 9e-06 AT5G17770 421 / 3e-150 NADH:cytochrome B5 reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00970 [flax] [poplar] FAD_binding_6 Oxidoreductase FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034633 pacid=23162726 polypeptide=Lus10034633 locus=Lus10034633.g ID=Lus10034633.BGIv1.0 annot-version=v1.0 ATGTCTATCCTATGCCGCCTCTCCCCTCGCCATCTAACCTCCCCCTTCCTCATCTTCCTTACCAAGTGTCTCGCCACGTACTCCGGCACCGCCGCTGCCG TCTCGAGAGACACCACTCCCTGGATTCCAGCTCCGCTATCCGAAATCAAACCGATAGCCGAGTCCCTGTACCACGTCAGCATCGACGTCTCGGACTCTCC CGATCTCGCCGCATCTTACACGTTCCCTGGACAATACTTGCAGCTCCGAGTCCCCGTGGTGGATAGGCAAACTTTCATGGCGATCGCTTCGCCGCCTTCA TTTGCCGCTTCGAGAGGAGCGTTTGAGTTTCTGGTGAAGAGCGTCCCTGGTTCGACGGCCGAGCTCTTAAGCCGCTTGAAGAGAGGAGATGTCTTGGAAT TGAGCCATGCTATTGGGAAAGGTTTCGAGTTCAATCGAATAGATCCTCCGGAGAAGTGTCAGGCTGTTTTGATTTTCGCCACTGGCTCTGGCATCAGTCC AATTCGATCTCTCATTGAGTCGGGGTTTAATGCTGACCGAAGGTCGGATGTCAGACTCTATTACGGAGCTAGAACCTTGAGAGAATGGCGTACCAGGTTC AAAGATTGGGAATCGTCGGGCATTAAGATTGTCCCAGTACTATCACAACCAGATTATAGTTGGAGAGGTGAAGCTGGTTATGTACAGGCTGCATATGCTA GGTCAACAAAGATATCCAACCCTGGAGGTGCAGGCGCTGTGCTTTGTGGGCAAAGACAGATGGCAGAGGTTAGTTGGACTTTTGCATCTTTTATTTTCGT CTCTGGTTTTCCTTTCCTACTGTTTGAACAAAATGTTTCTCCTGCCGGTGCGTTACAGTTAGAACTAGATGTAGGTTAG
AA sequence Show only first row Show all	>Lus10034633 pacid=23162726 polypeptide=Lus10034633 locus=Lus10034633.g ID=Lus10034633.BGIv1.0 annot-version=v1.0 MSILCRLSPRHLTSPFLIFLTKCLATYSGTAAAVSRDTTPWIPAPLSEIKPIAESLYHVSIDVSDSPDLAASYTFPGQYLQLRVPVVDRQTFMAIASPPS FAASRGAFEFLVKSVPGSTAELLSRLKRGDVLELSHAIGKGFEFNRIDPPEKCQAVLIFATGSGISPIRSLIESGFNADRRSDVRLYYGARTLREWRTRF KDWESSGIKIVPVLSQPDYSWRGEAGYVQAAYARSTKISNPGGAGAVLCGQRQMAEVSWTFASFIFVSGFPFLLFEQNVSPAGALQLELDVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10034633 [exp]	0	1
AT4G39840			unknown protein		Lus10041688 [exp]	6.8	0.8613
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037958 [exp]	8.9	0.8690
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	12.6	0.8600
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	16.2	0.8586
AT3G08780			unknown protein		Lus10014237 [exp]	16.4	0.8559
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	17.4	0.8554
AT3G17130			Plant invertase/pectin methyle...		Lus10016319 [exp]	20.2	0.8258
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	26.7	0.8354
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	27.1	0.8485
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	27.5	0.8553

Compare expression of checked genes

Lus10034633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.