Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15130 1059 / 0 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035265 [exp] 1032 / 0 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126900 [exp] 1159 / 0 AT1G15130 1165 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Potri.010G116400 [exp] 1133 / 0 AT1G15130 1079 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [flax] [poplar] BRO1 BRO1-like domain
Representative CDS sequence Show only first row Show all	>Lus10034634 pacid=23162815 polypeptide=Lus10034634 locus=Lus10034634.g ID=Lus10034634.BGIv1.0 annot-version=v1.0 ATGGCTGCCCAATCCTCATCCGCGGCCACAACCAATATCATGCTAGCAATCTACGAGAAGAAGACCACCTCGATCGACATCTACCGCCCACTGCGCAACT ACATCGCCTTCGTCTACTCTGAGCGCGACGCCCAAAACCTTGAAGACGACCTCCAAACCCTCAAGCAGTACCGCTCCGATCTCGAGCGACAGTCCGACCC TTCCCCTACCTCCCGCCGCGATCTCCTCCACAACTACTTCAAATCCCTATGCTTAGTCGAGACTCGCTTCCCTATCTCATCGGACAAGGACCACGTCAAT TCCCTCACCTTCGTATGGCACGATGCCTTCAAGGTCAAGCTCAAGGCGTCGCAGCAGAACATACACCTCGAGAAGGCAGCGGTGCTGTTTAATTTGGGCG CCGTTAACAGCCAGATTGGGCTGTCCTTCGATCGTGCGGCTGTCGCAGGCTCGTCTCAGTCGCTCCTCTACTCTGAGCGCGACGCCCAAAACCTTGAAGA CGACCTCCAAACCCTCAAGCAGTACCGCTCCGATCTCGAGCGACAGTCCGACCCTTCCCCTACCTCCCGCCGCGATCTCCTCCACAACTACTTCAAATCC CTATGCTTAGTCGAGACTCGCTTCCCTATCTCATCGGACAAGGACCACGTCAATTCCCTCACCTTCGTATGGCACGATGCCTTCAAGGTCAAGCTCAAGG CGTCGCAGCAGAACATACACCTCGAGAAGGCAGCGGTGCTGTTTAATTTGGGCGCCGTTAACAGCCAGATTGGGCTGTCCTTCGATCGGGCGACTGTCGA AGGTAGGAAGCAGGCGATCCACGCATTTATCGCTGCTGCGGGCGCATTTGCGTATTTGAGGGATAGTGAGTCGACTAAGGCTTCCATGGGATCCAGCACT ACGGTGGATGTATCTGTGGAGTGCGCTGGGATGTTGGAGAGGCTTATGCTAGCCCAGGCTCAGGAGTGTGTGTTTGAGAATACCATTGCCAAAGGGAGTA CTCCTGGTGTTTGTGCCAAGATTTCTAGACAGGTTGGGCTATACTATGAGGAAGCTTTAGCTGCACTCAATGTTGCTCCTTTGAAAGATCACTTCGATAA AGCATGGGTTGCTCATGTTCAGCTGAAAGCAGCACTATTTTTCGCAGAAGCTTGCTATAGGTATTGTTTAGAGCTGCACGAGAAGGAAGAAATTGCTGAA GAGATCGCGAGGTTGAGAATTGCAGTTAGTCACTTGGCCGAAGCCAAGAAAAACTCAAAAGGGGCGGCATCACAACACCTGGATGCAATTAGCAAGCTCG AAGCTAACATTAATCGCAACTTAGAGAGAGCGGTAAAAGAGAATGATAGGGTATACCTAATGAGAGTTCCATCACCACATTCCTTGTCTCCGCTCCCAGC CGTTTCTTTGGTTAAGCCTATGCCTATGAATGATGTGCTAGATGCCAGCAAGGTGAAGATGTTTGCTAGTCTTGTACCAGACAATAGTGCTAAGGCTCTT TCACGGTACACGGAAATGGTTGATGACGTTATCAGGACACAAGCAGAACAATTGCAACAAGGGAGTGAACTTGCACGAGTACGATTGAAGGAAATGGATC TCCCAGATTCTATTCTCGTTCTAGAAGGGAGTGTGGCATTGCCCCAAGATATTAAAGAAGATGTCGAAGCGGTGCAGATTAGCGGAGGCCCTGCTGGCCT GGAAGCTGAGCTACAACAGCTTAAGGATTTGAGGAGAGTTAACCAAGAGTTGTTAATTCAGACTGAGGAACTTCTGCAGAAGGAAGCTGCAGAGGATTCT CAGTTTAGAAGCCAATTTGGGACACGATGGACTAGGCCTCAATCAGCAACCTTGACAAAGAACCTGCAGGATAGATTGAATAGGTTTGCAGGCAACTTAA AACAAGCTGCAGAAAGTGATGCTAGAATTGAGCGGTCAGTGAGGGAAAATTATGGACTTATGGCCATACTTGATAAGCGCCCGATAGAATCTGCACTTCC CACTTTGGCGCGGCCGATTATGTCACTGGATGCGAATGAAGATGCTATTGTCCGGAACCTTAAACAATGCTTGGGGCAGTTGGAGAATCTTGGTGCCCAG CGGGCAGGCCTTGAAGATATGCTCAAAGAGATGAAAAGAAAGGACGACATTTTACCAAAGTTGATGACATCTACGGGATCGCATGATGATCTGTTCAGAA AAGAGATCTCAAAGTATGATAACATTTGCCAGGACATAGCCCACAATATTGAAGCACAGGAGCAGCTGCTATCACATATTCAGGCTGAAAATGAGAAGTT TTCTGCTGTGTTCAATCTAGAAGACTATAAAGCATCTCGTGAGAAGTGCTATAAGCAAATACAAGCTGCAATTGCAAAGTATCGAGAAACAAAGGACAAC ATCAATGAGGGTTTGAAGTTCTACGTAACTCTTCAGGATGCAATAACCAACATAAAGCAGCAGTGCAGCGATTTTGTGATGACGAGGAACATCCAGTGCC GAGAAATGATAGAAGACGTACAAAGACAGATGGCTGGATTGGGTTTCCAGGATCGCAAGAACTCAGGAGGACTTTACAACAGCTATCCCATGGTGAATCA GTCTCAACGATCCTCAACACAGCCTCCGGCAGACCCTCCAAACGTGCAACATAGTCACCCGCCACAACAGCCACCTCCTTACTATCAACACCATGCACCG ACAACAACGATGCACGGATACTCATACTCTCACCCTCCAACCCCATACAACACTTCACAGCCACAGCCGCCTCCTCCATATCACATCCATCCGGCACCCG GTGCTCCTTACCCACCTCCTCAAGTCCAACAGCAGCAACCGCCACAGCCAGGACAAGAGTATAGCCAGCCGGCCTATCCCGGATGGCGGGGTCCATACTA CAACTCTCATCCCCAGCAGCAGCAGCAACAAGGGGGTATGCCGCGGCCTCCCTACACAGTTCCAGGGCCATATCCTCCCTATTACAAATGA
AA sequence Show only first row Show all	>Lus10034634 pacid=23162815 polypeptide=Lus10034634 locus=Lus10034634.g ID=Lus10034634.BGIv1.0 annot-version=v1.0 MAAQSSSAATTNIMLAIYEKKTTSIDIYRPLRNYIAFVYSERDAQNLEDDLQTLKQYRSDLERQSDPSPTSRRDLLHNYFKSLCLVETRFPISSDKDHVN SLTFVWHDAFKVKLKASQQNIHLEKAAVLFNLGAVNSQIGLSFDRAAVAGSSQSLLYSERDAQNLEDDLQTLKQYRSDLERQSDPSPTSRRDLLHNYFKS LCLVETRFPISSDKDHVNSLTFVWHDAFKVKLKASQQNIHLEKAAVLFNLGAVNSQIGLSFDRATVEGRKQAIHAFIAAAGAFAYLRDSESTKASMGSST TVDVSVECAGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLKDHFDKAWVAHVQLKAALFFAEACYRYCLELHEKEEIAE EIARLRIAVSHLAEAKKNSKGAASQHLDAISKLEANINRNLERAVKENDRVYLMRVPSPHSLSPLPAVSLVKPMPMNDVLDASKVKMFASLVPDNSAKAL SRYTEMVDDVIRTQAEQLQQGSELARVRLKEMDLPDSILVLEGSVALPQDIKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLIQTEELLQKEAAEDS QFRSQFGTRWTRPQSATLTKNLQDRLNRFAGNLKQAAESDARIERSVRENYGLMAILDKRPIESALPTLARPIMSLDANEDAIVRNLKQCLGQLENLGAQ RAGLEDMLKEMKRKDDILPKLMTSTGSHDDLFRKEISKYDNICQDIAHNIEAQEQLLSHIQAENEKFSAVFNLEDYKASREKCYKQIQAAIAKYRETKDN INEGLKFYVTLQDAITNIKQQCSDFVMTRNIQCREMIEDVQRQMAGLGFQDRKNSGGLYNSYPMVNQSQRSSTQPPADPPNVQHSHPPQQPPPYYQHHAP TTTMHGYSYSHPPTPYNTSQPQPPPPYHIHPAPGAPYPPPQVQQQQPPQPGQEYSQPAYPGWRGPYYNSHPQQQQQQGGMPRPPYTVPGPYPPYYK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	0	1
AT3G58050			unknown protein		Lus10029299 [exp]	1.0	0.9154
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	1.4	0.9000
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	2.4	0.8963
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	3.5	0.8863
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	3.6	0.8413
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	3.7	0.8810
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	4.5	0.8895
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	4.9	0.8421
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	6.0	0.8935
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10006321 [exp]	6.3	0.8697

Compare expression of checked genes

Lus10034634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.