Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71120 375 / 1e-129 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT1G53920 158 / 9e-45 GLIP5 GDSL-motif lipase 5 (.1) AT3G14225 157 / 2e-44 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53940 153 / 2e-42 GLIP2 GDSL-motif lipase 2 (.1) AT5G40990 152 / 2e-42 GLIP1 GDSL lipase 1 (.1) AT5G42170 145 / 4e-40 SGNH hydrolase-type esterase superfamily protein (.1) AT1G06990 141 / 1e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 140 / 4e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 139 / 1e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G22810 137 / 3e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035266 [exp] 429 / 2e-151 AT1G71120 348 / 6e-120 GDSL-motif lipase/hydrolase 6 (.1) Lus10028423 [exp] 162 / 2e-46 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 162 / 2e-46 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 156 / 1e-43 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 149 / 1e-41 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 149 / 3e-41 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10001643 [exp] 149 / 3e-41 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 147 / 8e-41 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 146 / 4e-40 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127100 [exp] 397 / 3e-138 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1) Potri.007G133500 [exp] 188 / 4e-56 AT3G14225 296 / 7e-98 GDSL-motif lipase 4 (.1) Potri.007G133766 [exp] 181 / 2e-53 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.007G133700 [exp] 172 / 2e-50 AT3G14225 275 / 3e-90 GDSL-motif lipase 4 (.1) Potri.017G134701 [exp] 164 / 2e-47 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G134601 [exp] 164 / 3e-47 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.003G071400 [exp] 154 / 2e-43 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.017G136601 [exp] 154 / 4e-43 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.013G065100 [exp] 153 / 6e-43 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.019G024700 [exp] 151 / 2e-42 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10034635 pacid=23162716 polypeptide=Lus10034635 locus=Lus10034635.g ID=Lus10034635.BGIv1.0 annot-version=v1.0 ATGGCGGCCATGATCAAGCCTCCTCCTTTCACGCTTGTTGTTTACGTACTAGTAACGTTTTCATGTGTGCTTTGCACGTTTGCGGTTCCCACTGCAATCT TCACATTCGGGGACTCATTATTCGACGCCGGAACCAACCATTTCAACAAGAATTGCAGTGCTCAGGCTGATTTCCCTCCCTATGGTTCTTCCTTCTTCCA CCGCCCTACCGGCCGGTTCACCAACGGCCGCACCGTCCCCGATTTCATTTGTGAATTCATGGGAATAGAGTTGCAGAGTTCATTCCTGGAGGCAGAGATG CAAGTGTTGAACGGTAGTTGGAAGACTTTCCCTTCCAATGGCATTAACTTCGCCAGTGCTGGCAGCGGCCTCTTCCCTTCTACCAACCAATTTCTCAAAC TTAAAAGGAGTGACCACAATCCAGGAGCAGCTGCAGCAATTCAAAACCCTAATCAATCAGAACCAATTCCAAAACCCCCAAATCTCCCAATCAATCTTCT TGTTGGAATCCGGATCCAACGACATCTTCAACTACTTCCTCCCCTTTGGTACCCCAACCCTCCAACCAGATGCGTAGTCAAGTCAATGCTCTCTCAGGTC TCTACCTTCGTCTCCCAAATCTACTCCCTTGGAGCTCGCCGCATCGCCGTCTTCTCCCTCGGCCCCGTTGGCTGCGTTCCTGCCAGGGCGCTCCTCCCTG ACTCTCCCGTCGACAAATGCGACGAGAGGATCAACTCCATGGTTCGGATGTACAATGCGGGAATTGAAGCTATGGTGAAGGGTATTCCGGTCAAGTTCCC TGGCGCCGTCGCGGTTTTCGGGGACGTTTTCGGTATTGTACAGCGTTTTCGGGCCGACCCGCCTCGATACGGGTTTAAGGACGTGAGCAACGCTTGCTGT GGGGAAGGGAGATTAGGAGGGATGGTGCAATGTGGGAAAGAAGGGTACAAATTGTGTGGGAAGCCAAGTGACTTCTTGTTCTGGGATTACTTCCATCCTT CGGAGCACACTTACAGCCGCATCTCCAAGGCTTTGTGGCTTGGCAAAAATGTCACTATTCGTCCTTTTAATTTGAAGACACTACTCGTCTCCGGCCACCA TTTCTTGAATATTTGA
AA sequence Show only first row Show all	>Lus10034635 pacid=23162716 polypeptide=Lus10034635 locus=Lus10034635.g ID=Lus10034635.BGIv1.0 annot-version=v1.0 MAAMIKPPPFTLVVYVLVTFSCVLCTFAVPTAIFTFGDSLFDAGTNHFNKNCSAQADFPPYGSSFFHRPTGRFTNGRTVPDFICEFMGIELQSSFLEAEM QVLNGSWKTFPSNGINFASAGSGLFPSTNQFLKLKRSDHNPGAAAAIQNPNQSEPIPKPPNLPINLLVGIRIQRHLQLLPPLWYPNPPTRCVVKSMLSQV STFVSQIYSLGARRIAVFSLGPVGCVPARALLPDSPVDKCDERINSMVRMYNAGIEAMVKGIPVKFPGAVAVFGDVFGIVQRFRADPPRYGFKDVSNACC GEGRLGGMVQCGKEGYKLCGKPSDFLFWDYFHPSEHTYSRISKALWLGKNVTIRPFNLKTLLVSGHHFLNI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71120		GLIP6	GDSL-motif lipase/hydrolase 6 ...		Lus10034635 [exp]	0	1
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	2.4	0.7414
AT1G32730			unknown protein		Lus10011037 [exp]	4.9	0.7333
AT5G43360		PHT1;3, ATPT4, ...	PHOSPHATE TRANSPORTER 3, phosp...		Lus10012860 [exp]	11.6	0.6927
AT1G54410			dehydrin family protein (.1)		Lus10020271 [exp]	16.2	0.7024
AT5G55140			ribosomal protein L30 family p...		Lus10011966 [exp]	19.0	0.7473
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10042390 [exp]	28.9	0.7273
					Lus10018446 [exp]	33.4	0.7037
AT5G03450			Transducin/WD40 repeat-like su...		Lus10013821 [exp]	34.1	0.7390
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	54.7	0.6329
AT2G46850			Protein kinase superfamily pro...		Lus10030180 [exp]	56.7	0.6932

Compare expression of checked genes

Lus10034635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.