Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17350 81 / 1e-19 unknown protein AT3G03280 74 / 4e-17 unknown protein AT4G02090 43 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035268 [exp] 227 / 3e-77 AT5G17350 116 / 4e-33 unknown protein Lus10013490 [exp] 161 / 4e-51 AT3G03280 110 / 6e-31 unknown protein Lus10007960 [exp] 147 / 1e-45 AT3G03280 109 / 3e-30 unknown protein Lus10017620 [exp] 89 / 7e-23 AT5G17350 83 / 2e-20 unknown protein Lus10033578 [exp] 48 / 6e-07 AT1G60640 75 / 7e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116000 [exp] 151 / 2e-47 AT3G03280 131 / 4e-39 unknown protein Potri.008G127200 [exp] 147 / 6e-46 AT3G03280 127 / 2e-37 unknown protein Potri.004G094000 [exp] 111 / 1e-31 AT3G03280 143 / 1e-43 unknown protein Potri.017G121200 [exp] 100 / 5e-27 AT3G03280 145 / 7e-45 unknown protein Potri.002G196900 [exp] 42 / 5e-05 AT4G02090 92 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034636 pacid=23162801 polypeptide=Lus10034636 locus=Lus10034636.g ID=Lus10034636.BGIv1.0 annot-version=v1.0 ATGTTTGACTGTCCCAATTTCTTCCTAGCCAACTCCCAATCCCTCCACATCGGTCGCAGATTCTCTCCCTTACCTGCTGACGAGGAGCTGGAGCTTGGCA ACGTCTACCTCCTCTTCCCGATGAAGAGATCCAGCTCCGTCGTCACCGCCGCCGACATGTCCGTTTTTTTCTTGGCGGCGAATTCCGCCGCCAAACGGAT CTCCGGATTCAAGGGACCAGCCGGCGTAAGGATCCAGCCGGATTGCGGATCTGGAGAGATTATCCGGACGGAGGAAGGATCGGCCCCGGAAGTGAGCGGC GGAAGGAGGCAGACCTTGGAGGAAGTAGCGGAAGAGTTGGAAGTCCCACCGGAGTTTAAGTACAGGCTATCGATGTGCCGGTCGAGGAAGCCGACGCTGG AGACGATCAGGGAAGAGCCCGCGGTTCTGTCCAGATGA
AA sequence Show only first row Show all	>Lus10034636 pacid=23162801 polypeptide=Lus10034636 locus=Lus10034636.g ID=Lus10034636.BGIv1.0 annot-version=v1.0 MFDCPNFFLANSQSLHIGRRFSPLPADEELELGNVYLLFPMKRSSSVVTAADMSVFFLAANSAAKRISGFKGPAGVRIQPDCGSGEIIRTEEGSAPEVSG GRRQTLEEVAEELEVPPEFKYRLSMCRSRKPTLETIREEPAVLSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17350			unknown protein		Lus10034636 [exp]	0	1
AT4G14450		ATBET12	unknown protein		Lus10021208 [exp]	1.7	0.9112
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	1.7	0.9163
					Lus10018622 [exp]	2.0	0.9095
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10033798 [exp]	2.4	0.8971
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	3.5	0.9143
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	6.3	0.8986
AT4G25380		AtSAP10, SAP10	Arabidopsis thaliana stress-as...		Lus10038901 [exp]	8.7	0.8354
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10024087 [exp]	9.7	0.8616
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	9.8	0.8847
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	10.8	0.8352

Compare expression of checked genes

Lus10034636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.