Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 654 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 631 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 590 / 0 ARK2 receptor kinase 2 (.1) AT4G21380 583 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 583 / 0 ARK1 receptor kinase 1 (.1) AT4G21390 570 / 0 B120 S-locus lectin protein kinase family protein (.1) AT4G27290 553 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 542 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 535 / 4e-178 S-locus lectin protein kinase family protein (.1.2) AT1G11350 522 / 2e-173 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013245 [exp] 1420 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10013246 [exp] 1409 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030768 [exp] 1398 / 0 AT1G11340 667 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 1371 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10030766 [exp] 1365 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 1336 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 1126 / 0 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 937 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 886 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G035700 [exp] 810 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 803 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 789 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 782 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 774 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 773 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 694 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 676 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 672 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 645 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10034637 pacid=23162876 polypeptide=Lus10034637 locus=Lus10034637.g ID=Lus10034637.BGIv1.0 annot-version=v1.0 ATGGATGCACCATCATCAATGGCTCGGTGGTTCATTCTGTTTCCTCTTATTCTTGCTCTTCTCTTCCATGATAAAGGCTATGCATCATCAAATGACAGTA CTATACATGCTAACAGATCAGTCAAGGATGGCGAGCTTATCATCTCCAAAGCTGGCAACTTTGCTCTTGGGTTTTTCAGCCCTGGTAGTTCAACCTACAG ATACCTTGGTATCTGGTATCATAACAAGCCAGGCCAAACTGTGGTGTGGGTTGCTAACAGGAATACCCCCGTCAATGGCACTTCAGGAATCCTCGCTAAT GATGGATATGGAAACCTTTTGCTCCACAGCAGCACCCGAAATCAAGAGGTTCCCATATGGTCTACAAACGTTTCCAGAACTTTTCCTTGTTCAGCTCAAC TATTGGATTCGGGAAATCTGGTATTGGTCCAACAAGGTACAGCAAGTAACAATACCTCATTTGTGTGGCAAAGCTTTGATCATCCTACGGATACCTTGTT ACCAGGTATGAAAATCGGCATGAATCTAGAAACAGGTTTGAACATATTCCTGACATCTTGGAGATCAGGAGATGATCCAGGAATTGGCGATTTCTCGGTT AAGCTCAATCCGAATGGTTCGCCTCAGTTCTTTCTGTACCAGGGTATCAATCCCCGTTGGCGGAGTCTCCCATGGCCTTGGAAAATAGACCATCGTTTAT ACAATGAGTCTTTTTTTAATAATGAAGTTGGGATGTGGTACTCGTTTGCTCCTGATGATGCTTCGACGGTGTTGATGCTTGTGATCCACAATTCGGGAAC ATTGAGAGCAGTGGTATGGGACGAAGCTGGTGGGATATGGAAGGAGTTCCATGCGGTTTCGTATCAGAAGTGTGATATATATGGCTATTGTGGTGCTTAT GGAAAGTGTGACCCTTCTTTTCTTACAGAATGTATGTGCCTACCCGGTTATGAACCAAAGTCTCAAAGCAAGGTGCTTTTCGGAGGTGGAAATGGTGGGT GTGTCAGGAAGCGATCGGAATCCTCACTTTGTGGGAAGGGAGAAGGTTTTGTGAGAGTTAGAAATGTGAAGATTCCTGATGCATCGGAAGCAGTTTGGGT GGACCAGGGGTTGAACAAAGTGAACTGTGAAGATGAGTGTAGAAAGAATTGCTACTGCAGTGCATATACTACTGCTAATATTGTCGGGAAAGGGACTGGT TGTTTGACATGGAATGGAGAACTGATGGATACAGTACGCTCCCCAACACCTGATTCAGAATTCTATGTTCGTGTCGATGCTCTAGAACTAGCTGAGTATG CAGTTAAATCTGATGAGTTTGATGAGCTTGGTTTTAAGCTAAGCGTTTTCATTCCATCAGTTTCTTCGGTTTGGATTGTCTGCATCTTGTTCGCCTACAC ACTGTTCAAGAGGTGGAGAAAGTGGAAAGCAAGGAAAGCAACAGACAGGCAGATCAGAAACTTGTTTCGTCCGAGCGAAGATTCAAGTTACTTGCAGGAT TCTATGGTGACAAAGGAAATGGAGCGAAGTAAAATGTATCCAGAATTACCAGTTTTCAGTCTTGACGTGATACGTGCTGCAACCAACAACTTTTCATCTG ATAATAAACTTGGACAAGGGAGTTTTGGTTCTGTGTACAAGGGGAAATTTTCATCCGGGGAAGAGGTTGCTGTAAAAAGACCGCCAAAAAATTCAAGGCA GGGGCTAGAACAATTCAAAAGTGAAGTGTTCTTGATTTTGAAATTGCAACATAGGAACCTGGTGAAGCTCTATGGATGTTGCATTGATAAAGAAGAGCAG ATGTTGATTTATGAGTACTTACCCTATAAGAGTTTGAATTCACTTCTTTTTGTTCAGCATCAGATCGGTAGTCACCTATTCTTAGACTGGGGAAAACGGT TTAATATCATTATTGGTATTGCGCGTGGGATCTTATATCTTCATCAAGACTCGAGGTTCAGAATAATACACAGAGATCTAAAAATCAGCAATGTTCTCTT GGATGCGGAGCTTAATCCCAAAATATCTGATTTTGGGATGGCTAGAATCCTGGAGGGGGGCCAAGTTGAAGGGGTGACTAGTAGAATTGGTGGAACATAT GGCTACATGGCCCCAGAGTATGCTTACTGTGGGAAGTTCTCAGTGAAATCCGACGTTTATAGTTTTGGAGTGATGCTAGTGGAAATTGTGACTGGGAAGA GGGTCAATAGCGAGTTTGCTACTAGCGAAGAGGACAATACTTCCTTAAGCTTGAGTGGATACGTATGGGAGCTATGGAAAGCAAAGAGAGTGGGGGATAT AGTGGATCCATCAATTCAAGTATCGACTAGTACCATGAGATGCATCCAGATTGGGCTGTCATGTCTCGAGGAAGATCCGGTAGATCGACCAGATATGCAG ACAGTCGTTTTCATGTTAAACAACGAAACAACCCCACTTCCTCCTCTGAAACGTCCTGCATTCATCTGCGCTGCGAAGTCCAGTGTTGAGGTGAGGGTGG CAGAAGAATGTTCAATAAACGAGATGACATTTTCAGACACTATTACTCGATAA
AA sequence Show only first row Show all	>Lus10034637 pacid=23162876 polypeptide=Lus10034637 locus=Lus10034637.g ID=Lus10034637.BGIv1.0 annot-version=v1.0 MDAPSSMARWFILFPLILALLFHDKGYASSNDSTIHANRSVKDGELIISKAGNFALGFFSPGSSTYRYLGIWYHNKPGQTVVWVANRNTPVNGTSGILAN DGYGNLLLHSSTRNQEVPIWSTNVSRTFPCSAQLLDSGNLVLVQQGTASNNTSFVWQSFDHPTDTLLPGMKIGMNLETGLNIFLTSWRSGDDPGIGDFSV KLNPNGSPQFFLYQGINPRWRSLPWPWKIDHRLYNESFFNNEVGMWYSFAPDDASTVLMLVIHNSGTLRAVVWDEAGGIWKEFHAVSYQKCDIYGYCGAY GKCDPSFLTECMCLPGYEPKSQSKVLFGGGNGGCVRKRSESSLCGKGEGFVRVRNVKIPDASEAVWVDQGLNKVNCEDECRKNCYCSAYTTANIVGKGTG CLTWNGELMDTVRSPTPDSEFYVRVDALELAEYAVKSDEFDELGFKLSVFIPSVSSVWIVCILFAYTLFKRWRKWKARKATDRQIRNLFRPSEDSSYLQD SMVTKEMERSKMYPELPVFSLDVIRAATNNFSSDNKLGQGSFGSVYKGKFSSGEEVAVKRPPKNSRQGLEQFKSEVFLILKLQHRNLVKLYGCCIDKEEQ MLIYEYLPYKSLNSLLFVQHQIGSHLFLDWGKRFNIIIGIARGILYLHQDSRFRIIHRDLKISNVLLDAELNPKISDFGMARILEGGQVEGVTSRIGGTY GYMAPEYAYCGKFSVKSDVYSFGVMLVEIVTGKRVNSEFATSEEDNTSLSLSGYVWELWKAKRVGDIVDPSIQVSTSTMRCIQIGLSCLEEDPVDRPDMQ TVVFMLNNETTPLPPLKRPAFICAAKSSVEVRVAEECSINEMTFSDTITR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10034637 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028502 [exp]	20.1	0.8294
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	46.3	0.8088
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10015687 [exp]	51.2	0.7591
AT4G17260			Lactate/malate dehydrogenase f...		Lus10002982 [exp]	52.8	0.7985
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007900 [exp]	59.2	0.7865
AT4G40050			Protein of unknown function (D...		Lus10023156 [exp]	70.3	0.7441
AT1G23770			F-box family protein (.1)		Lus10006138 [exp]	84.4	0.7645
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10028501 [exp]	99.3	0.7821
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	102.8	0.7435
AT1G76405			unknown protein		Lus10016039 [exp]	113.7	0.7730

Compare expression of checked genes

Lus10034637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.