Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01270 619 / 0 ATQSOX2 quiescin-sulfhydryl oxidase 2 (.1) AT1G15020 593 / 0 QSO2, ATQSOX1 quiescin-sulfhydryl oxidase 1 (.1.2) AT2G47470 49 / 4e-06 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035269 [exp] 433 / 2e-150 AT2G01270 290 / 8e-96 quiescin-sulfhydryl oxidase 2 (.1) Lus10035270 [exp] 176 / 6e-53 AT1G15020 173 / 1e-52 quiescin-sulfhydryl oxidase 1 (.1.2) Lus10020691 [exp] 52 / 1e-06 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 50 / 3e-06 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 49 / 5e-06 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10042721 [exp] 44 / 0.0005 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127300 [exp] 684 / 0 AT1G15020 695 / 0.0 quiescin-sulfhydryl oxidase 1 (.1.2) Potri.010G115700 [exp] 666 / 0 AT2G01270 660 / 0.0 quiescin-sulfhydryl oxidase 2 (.1) Potri.002G198300 [exp] 50 / 2e-06 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 49 / 7e-06 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.005G179000 [exp] 45 / 0.0001 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin CL0172 [flax] [poplar] PF04777 [flax] [poplar] Evr1_Alr Erv1 / Alr family
Representative CDS sequence Show only first row Show all	>Lus10034639 pacid=23162837 polypeptide=Lus10034639 locus=Lus10034639.g ID=Lus10034639.BGIv1.0 annot-version=v1.0 ATGTCTCAAACATGTCTGATCCTCGTCTTCAGCTCCCTTCTTTTGCTCTTCCACCTCACTCCTACTGCGTCTTCCTCCTCCGGATCTCGCTCCCTTCTTC GATCTATATCCGGCGACAAGTCTGCCGGAGCCGATATCGCCGTCGATTTGAACGCCACCAGCTTCAATGCGATTCTCCGAGACACGCCCGCTACTCACGC CATCGTTGAATTCTTTGCCAACTGGTTGGTTTCTCTTTTCTCCTCCACTTCCTACTCAATTGAGCGTTCTTATTTGTTTGTAAATAGGGTGCTCCCTGTT TTCGTTTACCCTGAACAGTGTCCTGCTTGTAGAAATTATAAGCCGCAATATGAAAAGGTGGCGAGGCTGTTCAATGGCCCTGATGCAGTTCATCCTGGCA TTCTGTTGATGGCAAGGGTTGATTGTGCATCAAAGATAAATAGTGACCTCTGTGATAAGTTTTCCGTGAGTCACTATCCTATGCTATTTTGGGGCCAGCC CTCCAAATTTTTATCTGGCGGCTGGCAGCCTACACAAGAGAAAAGTGAAATTCATGCGATCGAGGTCGAGGACGCACGGACGGCTGACCGATTGATTGCT TGGATAAACAAGCAACTTGGGAGCTCATATGGCTTGGATGACGAGAAATTTGAAAATGAGCACCTTATGTCAAATATTTCGGATATTCAACAGATCGCAC GGGCTGTCTATGATGTTGAGGAAGCAACATCAACTGCATTTGAAATCATATTCAGTCACAAGATGATCAAAGCTGAAACTAGGGCTTCATTTATTAAATT CCTTCAGATTTTAGTTGCCCATCATCCTTCCAAGAGGTGTCGGAAGGGTAGCGCAGAAGTACTTGTGAACTTCGATGACTTGTGTCCTCCAGATACTTTG TTGGCTAATGGACAGGAGGTCGTTGATACTAGCAAGGCTGTGCTGGGAAATTTTCGCATTTGTGGAGAAGATATTCCTCGAGGATATTGGATGTTCTGCC GTGGAAGCAAGAATGAGACTAGGGGCTTCAGCTGCGGCTTATGGGTTCTGTTGCACTCTCTACCAGTGAGAGTTGACGATAAAGAGAGCCATTTCACATT TACAGCTATCTGTGATTTTGTTAGCAACTTCTTTATTTGTGAGGAGTGTCGGCGGCATTTTCATGAGATGTGTTTAAGTGTTAAAACACCATTTGAGACA TCTCGTGATGTCACCCTTTGGCTATGGAGTGCACATAACAAAGTTAATGAGAGATTAATGAAGGAAGAAGCAACTTTGGGGACCGGCGACCCTAAGTTCC CCAAGATGACCTGGCCTCCGAAACAACTTTGCCCTGCATGTTATCGCTCGACTGGCAGCAATGAGGTTGACTGGGATTTGGATGAAGTATACACATTCTT GGTGAACTACTATGGCAGAACACTGGTCTCTTTGTACAATGAGAAGGATGTCGTTGGGAACGAAGTGGTCGGTTTGAGCGAAGATACAGTGGGATCGACG AACGCAGTTGTGGTTCCAGTGGGGGCTGCATTGGCAATCGCCCTAGCTAGCTGCGCTTTCGGAGCTCTTGCTTGTTATTGGCGGTCACGGCAGAAGAGCC GAGGCGAGGTTAAATTTAGAAGTCAGGTCCGAAACAAATACAAAGAGAGAGAGTTCGTGGGAGATGGATGGAGACGAGACTCGTGA
AA sequence Show only first row Show all	>Lus10034639 pacid=23162837 polypeptide=Lus10034639 locus=Lus10034639.g ID=Lus10034639.BGIv1.0 annot-version=v1.0 MSQTCLILVFSSLLLLFHLTPTASSSSGSRSLLRSISGDKSAGADIAVDLNATSFNAILRDTPATHAIVEFFANWLVSLFSSTSYSIERSYLFVNRVLPV FVYPEQCPACRNYKPQYEKVARLFNGPDAVHPGILLMARVDCASKINSDLCDKFSVSHYPMLFWGQPSKFLSGGWQPTQEKSEIHAIEVEDARTADRLIA WINKQLGSSYGLDDEKFENEHLMSNISDIQQIARAVYDVEEATSTAFEIIFSHKMIKAETRASFIKFLQILVAHHPSKRCRKGSAEVLVNFDDLCPPDTL LANGQEVVDTSKAVLGNFRICGEDIPRGYWMFCRGSKNETRGFSCGLWVLLHSLPVRVDDKESHFTFTAICDFVSNFFICEECRRHFHEMCLSVKTPFET SRDVTLWLWSAHNKVNERLMKEEATLGTGDPKFPKMTWPPKQLCPACYRSTGSNEVDWDLDEVYTFLVNYYGRTLVSLYNEKDVVGNEVVGLSEDTVGST NAVVVPVGAALAIALASCAFGALACYWRSRQKSRGEVKFRSQVRNKYKEREFVGDGWRRDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10034639 [exp]	0	1
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	5.1	0.8524
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10004096 [exp]	5.7	0.8282
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10037458 [exp]	10.1	0.8308
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	10.7	0.8499
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	14.8	0.8407
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10004095 [exp]	15.5	0.7855
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	18.5	0.8298
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	18.7	0.8388
AT4G38040			Exostosin family protein (.1)		Lus10012723 [exp]	26.2	0.8266
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	27.4	0.8400

Compare expression of checked genes

Lus10034639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.