Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01275 202 / 5e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 156 / 3e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 144 / 2e-41 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT1G14260 142 / 1e-40 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G47550 137 / 1e-38 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 123 / 5e-33 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 105 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 93 / 2e-22 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 58 / 3e-09 RING/U-box superfamily protein (.1.2) AT4G32670 54 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035271 [exp] 479 / 8e-173 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10013491 [exp] 293 / 2e-96 AT5G13240 299 / 1e-99 transcription regulators (.1) Lus10004058 [exp] 241 / 2e-79 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 207 / 1e-65 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10012826 [exp] 148 / 1e-42 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10021670 [exp] 139 / 4e-39 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10007961 [exp] 133 / 3e-36 AT5G13240 260 / 2e-86 transcription regulators (.1) Lus10034454 [exp] 131 / 3e-36 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 131 / 3e-36 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115600 [exp] 314 / 5e-108 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 300 / 2e-102 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 252 / 2e-83 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 216 / 5e-70 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G086300 [exp] 154 / 4e-45 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G169200 [exp] 150 / 7e-44 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.014G121900 [exp] 120 / 2e-32 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G111700 [exp] 117 / 2e-31 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 117 / 2e-31 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.002G196600 [exp] 106 / 2e-27 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10034640 pacid=23162852 polypeptide=Lus10034640 locus=Lus10034640.g ID=Lus10034640.BGIv1.0 annot-version=v1.0 ATGAAGTTGTTATTATATATCCCATCTCGAGGCCTAAAGGAAAAGTTCTTTACACCTTTTTGTTGTTTCCAGCTTCCAGCTGGTACAGGTCTTGAGAAGA AGAAGCTCCTTGGTGTTCTAGGAGAAGCTGCTGGATTTGCGGTTTTCTGTACTGTGATGGGAGATCATTTTGTGTTGTTGGTGGACCGACTGTTAACCGA ATCAACACTAGAAGCTGCAATCGAGAGCAGGCTTCGGTCTATGCAAGCCACTGCGTCTGGAGTGGATGATGATGATTTGGAAGTGGAAAAGCCTTATCAG AATATCGATTTCGATGATATATCAACACCCAGGAAGATAGTGGAATGCAGGATATGCCAGGATGATGATGTAGATTCCAACATGGAGACGCCTTGCTCTT GTTGTGGCAGCCTCAAGTATGCTCACAGGAGATGCATACAGAAGTGGTGTAACGAGAAGGGGAACACTATATGTGAAATATGTCAACAGCCATTCAAGCC TGGTTATACAGCCCCACCACCTTTGTTTCACTTCGGACGTATACCAATAAACCTGAGGGGAAGTCGGGAAATGTCTAGAAGAGAAATACGCGGTCCCCGC TTTGTGGCAGTGGTATCTACAGAACACAATCTAGCTAGTCCTGATTATGACAACCATTCTACATATGCTACGAGAAGTGTGATGTGTTTCCGCTCCGTAG CCATCATTTTAATATTGCTACGTATTACTGGAATCGTTCTCCCCATCTATGTCATGGTGAAATCCTTAACTGCTTTTCAACAACGCCGCCAACAACAGGA AGTTCCTTCATCTGACGACGAACCTGAAGAGGCTGAGCATCACTCGGCCCTGCAGGTCGAGTCGCATATAATCAATGTCCAGTAG
AA sequence Show only first row Show all	>Lus10034640 pacid=23162852 polypeptide=Lus10034640 locus=Lus10034640.g ID=Lus10034640.BGIv1.0 annot-version=v1.0 MKLLLYIPSRGLKEKFFTPFCCFQLPAGTGLEKKKLLGVLGEAAGFAVFCTVMGDHFVLLVDRLLTESTLEAAIESRLRSMQATASGVDDDDLEVEKPYQ NIDFDDISTPRKIVECRICQDDDVDSNMETPCSCCGSLKYAHRRCIQKWCNEKGNTICEICQQPFKPGYTAPPPLFHFGRIPINLRGSREMSRREIRGPR FVAVVSTEHNLASPDYDNHSTYATRSVMCFRSVAIILILLRITGIVLPIYVMVKSLTAFQQRRQQQEVPSSDDEPEEAEHHSALQVESHIINVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10034640 [exp]	0	1
AT2G43120			RmlC-like cupins superfamily p...		Lus10001159 [exp]	6.2	0.8838
AT1G68300			Adenine nucleotide alpha hydro...		Lus10041436 [exp]	10.8	0.9140
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10012124 [exp]	10.8	0.8755
AT4G27290			S-locus lectin protein kinase ...		Lus10014810 [exp]	13.4	0.9075
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	14.1	0.9100
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013940 [exp]	14.5	0.8717
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10035271 [exp]	19.1	0.9066
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	20.1	0.8890
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	20.9	0.8713
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	21.1	0.8855

Compare expression of checked genes

Lus10034640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.