Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71110 563 / 0 unknown protein AT2G12400 339 / 5e-110 unknown protein AT2G25270 328 / 9e-106 unknown protein AT1G80540 264 / 3e-81 unknown protein AT5G67550 70 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013492 [exp] 669 / 0 AT1G71110 645 / 0.0 unknown protein Lus10007962 [exp] 588 / 0 AT1G71110 578 / 0.0 unknown protein Lus10035272 [exp] 422 / 1e-142 AT1G71110 503 / 2e-174 unknown protein Lus10008028 [exp] 367 / 6e-121 AT2G12400 641 / 0.0 unknown protein Lus10001945 [exp] 356 / 2e-116 AT2G25270 650 / 0.0 unknown protein Lus10008813 [exp] 351 / 9e-115 AT2G12400 616 / 0.0 unknown protein Lus10038102 [exp] 259 / 6e-80 AT2G25270 468 / 5e-161 unknown protein Lus10001929 [exp] 249 / 3e-75 AT2G25270 457 / 3e-156 unknown protein Lus10014341 [exp] 233 / 8e-70 AT2G25270 352 / 7e-116 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G115500 [exp] 639 / 0 AT1G71110 646 / 0.0 unknown protein Potri.006G060600 [exp] 371 / 2e-122 AT2G12400 579 / 0.0 unknown protein Potri.018G120200 [exp] 360 / 5e-118 AT2G12400 596 / 0.0 unknown protein Potri.018G023200 [exp] 359 / 1e-117 AT2G25270 595 / 0.0 unknown protein Potri.006G258700 [exp] 355 / 3e-116 AT2G25270 590 / 0.0 unknown protein Potri.007G132601 [exp] 118 / 5e-28 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 107 / 1e-24 AT5G67550 182 / 3e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034641 pacid=23162707 polypeptide=Lus10034641 locus=Lus10034641.g ID=Lus10034641.BGIv1.0 annot-version=v1.0 ATGTCTTCAATTCTGGGGTTCCGGTTGTTTTTGGCCTTGTGGGTTGCTGTTACTTTCAGCTGGTCTGACGTTTCAGCTCACCTTCAGAACGATGAATCCA CCGACGACAGCTACTCCTCCAAGTCCTCGTTAGGACAAGTGAGTTTGGGATCATGGGAGGATACTAGTGCACAAGCGCCTGGGCCGTCTAACGATGGTTC AAAGAGTATTCTTCTGTTAGCAGCTGAGAGGACTGATCGGCCTGACATACTCAACGGATTTAAGCACTATAGAGGAGGTTGGGACATCACCAATCGCCAT TACTGGGCTGGGACTCCACAAATCGCCATTACTGGGCTTCTGTTGGATTCACTGGGGCGTCTGGTTTCATCTTGGCCATCTTGTGGTTCTTCTCCTTCGG ATTGGCTGTTTTGGTGCACCATTTCTGTGGATGGAAGGACCGGATGCATCCTTCTTTCTGTTGGCCAGGGTGAGTTCCATGGAGAAGCTATGGATACACT GAAGTATGTTGTAAACCAATCAGATTACACAGTCCAAATCCTCCGGAATGTCACGGAGTATCTTTCCCTTGCAAAGACCATCAAAGTGGCCCAAGTTCTT CTTCCTTCCAAAACTATGGACAACATTGACAAACTGAATTTGGATTTAAATGCTGTGGCCAATACACTCGATGACAAGACACATGAAAATTCTCAAAAGA TCACGACTGTGTTCATTGCTGTGCGGTCTGCACTAATAGCCATCGCTATGGTGATGCTTGTACTTGCCGTTGTTGGTTTTGTACTGTCCATTCTTGGTCA CCAGCATGCAATCTACATATTCGTGACGAGCGGCTGGTTGTTGGTAGCGATAACGTTCATTCTTTGTGGTGTTTTCATTATCTTCCACAATGCAATTACA GACACTTGTACAGCAATGGATGAATGGGTTCAAAATCCTCAGGCAGCTACAGCACTCGGCGATATCCTCCCTTGCGTAGACCAGAATACTACAAACAAGA CCCTCTCGCAAAGTAAAGAAGTTATCAACAACCTAGCAAATGTGGTCAACACATACATATACACCTTCGCGAATGTAAACCCATCCAGAGACGAATTCAA CTACTACAACCAGTCCGGACCTCCCATGCCTCCCATGTGTTTCTTGTTTGACTCGCAACTCCATGAACGCCAATGTGCTGTCCAAGAGGTCTCAGTGGCT AATGCCTCTTTGGTGTGGCAAAGCTATGTGTGCCAAGTTTCGTCGTCGGGGAAGTGCACAACTGCTGGAAGGGTCACACCAGACGTTTACAGGCAGTTGG TGGCAGCTGTGAACGAAACCTATGCACTCGAATACTATACTCCGCTTCTGCTCAGTCTTCAGGACTGCAAATTCGTAAGGGAAACCTTCCGAGAAATCAC ATCAACTTATTGTCCTCCATTGGAGCATTACCTTCAGCTCGTAAATGCAGGGCTCGGATTGATCTCTGTCGGTGTTTTGCTCTGTTTGGTTCTCTGGATA CTCTACGCAAACCGCCCCCAAAGGGAGGAAGTGTTTGCCAAGCTGTGGTTGCCCATTAAAGGGGGCAGCAGTATGAGCAAGAAAAACCAGTCCCCTCTGA GGAACAAATGCAGTGACAGTAAAAGTAATGTGTCTTTGTCAAATACAAATGCAGGTATTAATTAG
AA sequence Show only first row Show all	>Lus10034641 pacid=23162707 polypeptide=Lus10034641 locus=Lus10034641.g ID=Lus10034641.BGIv1.0 annot-version=v1.0 MSSILGFRLFLALWVAVTFSWSDVSAHLQNDESTDDSYSSKSSLGQVSLGSWEDTSAQAPGPSNDGSKSILLLAAERTDRPDILNGFKHYRGGWDITNRH YWAGTPQIAITGLLLDSLGRLVSSWPSCGSSPSDWLFWCTISVDGRTGCILLSVGQGEFHGEAMDTLKYVVNQSDYTVQILRNVTEYLSLAKTIKVAQVL LPSKTMDNIDKLNLDLNAVANTLDDKTHENSQKITTVFIAVRSALIAIAMVMLVLAVVGFVLSILGHQHAIYIFVTSGWLLVAITFILCGVFIIFHNAIT DTCTAMDEWVQNPQAATALGDILPCVDQNTTNKTLSQSKEVINNLANVVNTYIYTFANVNPSRDEFNYYNQSGPPMPPMCFLFDSQLHERQCAVQEVSVA NASLVWQSYVCQVSSSGKCTTAGRVTPDVYRQLVAAVNETYALEYYTPLLLSLQDCKFVRETFREITSTYCPPLEHYLQLVNAGLGLISVGVLLCLVLWI LYANRPQREEVFAKLWLPIKGGSSMSKKNQSPLRNKCSDSKSNVSLSNTNAGIN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71110			unknown protein		Lus10034641 [exp]	0	1
AT1G71110			unknown protein		Lus10035272 [exp]	1.4	0.8340
AT1G09870			histidine acid phosphatase fam...		Lus10040951 [exp]	8.6	0.8052
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10027208 [exp]	17.7	0.7442
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	29.8	0.7811
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10029594 [exp]	30.9	0.7696
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	31.0	0.7873
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	33.2	0.7571
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	34.4	0.7751
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10039284 [exp]	34.6	0.7556
AT5G12220			las1-like family protein (.1.2...		Lus10036063 [exp]	36.9	0.7987

Compare expression of checked genes

Lus10034641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.