Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08160 499 / 4e-179 ATPK3 serine/threonine protein kinase 3 (.1.2) AT2G32850 77 / 2e-15 Protein kinase superfamily protein (.1.2) AT4G25390 54 / 9e-08 Protein kinase superfamily protein (.1.2) AT1G57870 49 / 2e-06 ATSK42 shaggy-like kinase 42 (.1.2.3) AT2G19190 49 / 5e-06 FRK1 FLG22-induced receptor-like kinase 1 (.1) AT3G08730 48 / 7e-06 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT1G09840 47 / 1e-05 AtHIR1, ATSK41 hypersensitive induced reaction 1, shaggy-like protein kinase 41 (.1.2.3.4.5.6) AT5G14640 47 / 1e-05 ATSK13 shaggy-like kinase 13 (.1) AT2G11520 47 / 1e-05 CRCK3 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) AT2G37840 47 / 2e-05 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013493 [exp] 518 / 0 AT5G08160 592 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10007963 [exp] 504 / 0 AT5G08160 597 / 0.0 serine/threonine protein kinase 3 (.1.2) Lus10035273 [exp] 372 / 5e-130 AT5G08160 238 / 7e-78 serine/threonine protein kinase 3 (.1.2) Lus10003916 [exp] 78 / 1e-15 AT2G32850 661 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037472 [exp] 78 / 1e-15 AT2G32850 660 / 0.0 Protein kinase superfamily protein (.1.2) Lus10025213 [exp] 54 / 1e-07 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10036568 [exp] 51 / 6e-07 AT4G00720 733 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 51 / 7e-07 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10013088 [exp] 50 / 1e-06 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G057300 [exp] 498 / 2e-178 AT5G08160 610 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.015G055200 [exp] 494 / 7e-177 AT5G08160 600 / 0.0 serine/threonine protein kinase 3 (.1.2) Potri.001G228100 [exp] 74 / 4e-14 AT2G32850 717 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G155000 [exp] 50 / 9e-07 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.014G075100 [exp] 49 / 3e-06 AT4G00720 778 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.006G181000 [exp] 47 / 8e-06 AT3G45670 213 / 4e-66 Protein kinase superfamily protein (.1) Potri.002G190500 [exp] 47 / 1e-05 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.004G193300 [exp] 46 / 3e-05 AT5G20930 886 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Potri.009G155400 [exp] 45 / 4e-05 AT5G20930 914 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Potri.008G025800 [exp] 45 / 4e-05 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034642 pacid=23162830 polypeptide=Lus10034642 locus=Lus10034642.g ID=Lus10034642.BGIv1.0 annot-version=v1.0 ATGGGCTGTTCCTTCTCCGGCCTCAATGCACTCTATGACGCTGTCAACGGCGGTGGTGATGTCTGGATCAACGACGTCCGTTTCCGAATCCTCAGGCAGC TTGGCGAAGGAGGCTTCGCCTTTGTTTTCCTGGTCAAGGAGGTTCCCGCCGACAACTCTTCCGCCGCCGGCGCCGGCCTCGCCGCCAAAGTCAAGGACAA ATGCCACCTTTCTGGTACATATCCCGCATTCGTGATTTCTGATCAGAAAGGCGTTACCGTTATTCGAGAGGATGGGACTTATGCAATGAAGAAGGTTCTG ATTCAGAACAATGAGCAGCTGGAGCTGGTACGAGAAGAGATTCGTGTTTCATCGTTGTTTAACCATCCAAATCTTCTTCCTCTGCTGGATCATGCTATCA TTTCAGTTAAGCTTTGTGCAGGACTGAAGCACATGCACAATTTTGAGCCTCCATATGCACACAATGATGTGAAACCTGGCAATGTTCTCCTAACACATAG GAAAGGGCAGTCGCCTATTGCCATATTGATGGATTTTGGCAGTGCTCGACCGGCAAGAAAGCAAATTCGTTCCCGTACAGATGCTCTACAATTGCAGGAA TGGGCAGCAGAGCACTGTTCAGCACCAATTCGAGCTCCAGAGTTGTGGGATTGCCCTAGTCATGCTGATATTGATGAAAGAACTGATGTTTGGTCTCTGG GATGCACACTTTATGCCATCATAGCTATCGTTTCAAGCAGACTAGTCTGGGTCTATAGTTTCGTGAAATTGAAGCTCAGATGTAATTGGTGTTTCAGGTA TGGGGTATCTCCATTTGAGTATGCTCTTGGAGAGTCTGGAGGGAGCCTACAACTAGCCGTTTTGAATGCACAGATAAAATGGCCAGCCGGACCTAAGTCT GCATATCCAGAAGCATTGCACCAGTTTGTGACATGGATGCTTCAGCCACAAGCCACCATGCGCCCTCGCATTGACGACATTATCATTCACGTCGACAAGT TGATCACTAAGTTTTCGAGCTAA
AA sequence Show only first row Show all	>Lus10034642 pacid=23162830 polypeptide=Lus10034642 locus=Lus10034642.g ID=Lus10034642.BGIv1.0 annot-version=v1.0 MGCSFSGLNALYDAVNGGGDVWINDVRFRILRQLGEGGFAFVFLVKEVPADNSSAAGAGLAAKVKDKCHLSGTYPAFVISDQKGVTVIREDGTYAMKKVL IQNNEQLELVREEIRVSSLFNHPNLLPLLDHAIISVKLCAGLKHMHNFEPPYAHNDVKPGNVLLTHRKGQSPIAILMDFGSARPARKQIRSRTDALQLQE WAAEHCSAPIRAPELWDCPSHADIDERTDVWSLGCTLYAIIAIVSSRLVWVYSFVKLKLRCNWCFRYGVSPFEYALGESGGSLQLAVLNAQIKWPAGPKS AYPEALHQFVTWMLQPQATMRPRIDDIIIHVDKLITKFSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	0	1
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	1.0	0.9557
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	2.4	0.9326
AT1G50380			Prolyl oligopeptidase family p...		Lus10015387 [exp]	3.0	0.8968
AT4G20720			dentin sialophosphoprotein-rel...		Lus10031541 [exp]	3.5	0.8992
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10042528 [exp]	5.9	0.9011
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	6.0	0.9253
AT1G69430			unknown protein		Lus10037135 [exp]	6.0	0.8891
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10026551 [exp]	6.3	0.8964
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	7.5	0.8992
AT4G26455		WIP1	WPP domain interacting protein...		Lus10008336 [exp]	9.6	0.8737

Compare expression of checked genes

Lus10034642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.