Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18230 166 / 3e-46 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 155 / 2e-42 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 110 / 3e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 105 / 3e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 97 / 3e-22 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 92 / 2e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 91 / 5e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 92 / 2e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 85 / 4e-18 PB1 domain-containing protein tyrosine kinase (.1) AT5G57610 84 / 1e-17 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007965 [exp] 198 / 4e-60 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 193 / 3e-56 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 147 / 3e-39 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 117 / 2e-29 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 112 / 8e-28 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 108 / 8e-28 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10033570 [exp] 105 / 6e-25 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 104 / 9e-25 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10017612 [exp] 104 / 1e-24 AT5G16220 185 / 1e-52 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G053500 [exp] 194 / 1e-56 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 151 / 5e-41 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 145 / 1e-38 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 113 / 2e-28 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 112 / 7e-28 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 104 / 6e-25 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 103 / 2e-24 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G095600 [exp] 98 / 1e-22 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.017G119100 [exp] 97 / 4e-22 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G052000 [exp] 96 / 1e-21 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10034643 pacid=23162871 polypeptide=Lus10034643 locus=Lus10034643.g ID=Lus10034643.BGIv1.0 annot-version=v1.0 ATGGATCTACCAACGCCGGCCACCTCCGCCGCCGCTGCTAACATCCACCTGATGCATTACCCGCCGCCGGAATCCGTCGACTCCTCCCCCAGACGGACGC AGCCTCAGCCGGACAACTTCATCACTAACGCCGTCAATGACTCCACCGTCGCCCCCGCCGCCGCCGCTGGCGTCCTACCCGCCGCGGCGCGGGGCACACC GCTCACCAAGCTAAGGCTGATGTGCAGCTACGGAGGGCACATAATCCCCCGCCCGCACGACAAATCCCTCTGCTACGTCGGTGGCGAGACTCGAATCGTC GTCGTGGACCGGAACTCTTCCATAGGATCGCTCTCCTGCCGCCTCTCCCGGATTCTTTCCCTCAACGGCCGTCCCTTCACGCTTAAATACCAGCTCCCGA ACGAAGACCTAGACTCCTTGGTCTCCGTCGCCACCGACGAAGACATCGAGCACATGATCGATGAATACGACCGAATCACTGCCGCAAGCGCCGCCGGTGC AGCCCTAACTTCCTCCTGCTCCTCCTCCCCGCGGATTCGCCTCTTCATCTTCTTCAACAAGCCGGTCACCGCCGCTTCCATGGGCTCGTTGAAATCCGAG TCGTGGTTCCTCGACGCGCTCAACTCGGGTTCCCCGTCTGGGTCGGACTCCGGGTTGCCGAGAAACCTATCCGATACCGCCACAATGGACGGATGCTTGG TCCCTGGATTCGTCAACAGCAATCACAACCACAATCATCATCAGCAGGATTCCCCGATCGCGGCGGAGAATCTCACTCCCGCTGCTGCTAATGGTCCGCC GTCTTGCGGATCGTCGAGCTCGTCGTCGCCGTCGGCGACGGGGGGTCTGCTTCCTCCGCGTTGTGGCCGATTAGGGTTCGGCAAGCTGCAGATTCGGATC ATCAGGGTTTCGAAGGGGATCAGGAACAGCAGTATGGGTATTATCAGCATCAATTGA
AA sequence Show only first row Show all	>Lus10034643 pacid=23162871 polypeptide=Lus10034643 locus=Lus10034643.g ID=Lus10034643.BGIv1.0 annot-version=v1.0 MDLPTPATSAAAANIHLMHYPPPESVDSSPRRTQPQPDNFITNAVNDSTVAPAAAAGVLPAAARGTPLTKLRLMCSYGGHIIPRPHDKSLCYVGGETRIV VVDRNSSIGSLSCRLSRILSLNGRPFTLKYQLPNEDLDSLVSVATDEDIEHMIDEYDRITAASAAGAALTSSCSSSPRIRLFIFFNKPVTAASMGSLKSE SWFLDALNSGSPSGSDSGLPRNLSDTATMDGCLVPGFVNSNHNHNHHQQDSPIAAENLTPAAANGPPSCGSSSSSSPSATGGLLPPRCGRLGFGKLQIRI IRVSKGIRNSSMGIISIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	0	1
AT5G59790			Domain of unknown function (DU...		Lus10005887 [exp]	3.9	0.9324
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10033555 [exp]	4.2	0.9161
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	5.7	0.9277
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	7.6	0.9353
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	10.9	0.9335
AT1G47380			Protein phosphatase 2C family ...		Lus10006485 [exp]	16.9	0.8584
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	17.9	0.9237
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	19.5	0.9153
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10039324 [exp]	21.0	0.8454
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10036147 [exp]	25.2	0.8658

Compare expression of checked genes

Lus10034643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.