Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17970 139 / 6e-39 RING/U-box superfamily protein (.1) AT1G73760 125 / 1e-33 RING/U-box superfamily protein (.1) AT2G15530 116 / 2e-29 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 115 / 5e-29 RING/U-box superfamily protein (.1) AT5G42940 109 / 4e-27 RING/U-box superfamily protein (.1) AT4G31450 107 / 2e-26 RING/U-box superfamily protein (.1) AT5G10650 105 / 7e-26 RING/U-box superfamily protein (.1.2) AT1G45180 103 / 4e-25 RING/U-box superfamily protein (.1) AT5G24870 101 / 2e-24 RING/U-box superfamily protein (.1.2) AT1G53190 100 / 4e-24 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021722 [exp] 400 / 8e-142 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10013497 [exp] 177 / 4e-55 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10007967 [exp] 176 / 4e-54 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10010372 [exp] 108 / 2e-26 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10040389 [exp] 102 / 1e-24 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10042443 [exp] 97 / 1e-22 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2) Lus10026941 [exp] 96 / 3e-22 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10020145 [exp] 94 / 7e-22 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10024810 [exp] 92 / 5e-21 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043900 [exp] 169 / 3e-50 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G053800 [exp] 165 / 1e-48 AT1G73760 271 / 2e-88 RING/U-box superfamily protein (.1) Potri.018G005600 [exp] 118 / 3e-30 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.002G124300 [exp] 118 / 5e-30 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 114 / 1e-28 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.006G274700 [exp] 110 / 2e-27 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.009G100100 [exp] 107 / 4e-26 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.005G139900 [exp] 105 / 1e-25 AT4G34040 160 / 1e-41 RING/U-box superfamily protein (.1) Potri.007G045500 [exp] 103 / 6e-25 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.001G373700 [exp] 100 / 4e-24 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034644 pacid=23162771 polypeptide=Lus10034644 locus=Lus10034644.g ID=Lus10034644.BGIv1.0 annot-version=v1.0 ATGCCGGAGAGTAGCAACACCGCCAACGGTACGGCCGCCGGCAATAAGATGAAGAAGAACACAACGGTCAGTGGATCGGGATGCACTGCTGAAGTGTCCT GGAAGGTTCCGGTGCCAGCGGCGATCAGGTCGTTGGCTGATTGGGAATGGAAGAAGGTGAAAGTAAAGAAGATGAACCAAACAGCTGCTTCTACTGCCTC TCGTCCTCTTATTCCTCCTCCGTCGCAATCGAAGCTGCAGAGGACGATGGAGAAGAAGGAGATTGGGACAAGCGAACAGCTCCGGATCGTTGATTCTGTA TGCTCTATCGCTACGGCAAGAAGCGTTTCAAGGAGAGGGAAGATTACAATCAATCCGAGGGAAAGAGAGATGGTAATCGAGATGTTAATGATTGTTAATG GTTTCAAGATGGAAGACCGACAGCAGGATAGGTATCATGATGACTGGAGACTTGACATTGATGATTTGTCATACGAGCAACTACTCGCGCTAACTGATAG GATTGGGTACGTAACTACGGGACTGAAAGAAGCTGAGATTGGCAAATGCATCAGTCAGTTTAAGCTCTCAGTCCTTGGTGAACTTTCGTGCCAAATTGGT ACCACATTGGGCAAGAAATGCACCGTTTGTCAGGAGGAGTTTGAAGGAGGTAACGAGCTGGGGAAGCTGGAATGCGGGCATGGCTTCCACCTTGAGTGTA TCAAGCAGTGGCTAGCTAATAAAAACACATGCCCAGTATGCAAAACTGAACCATTTGCTAGGGGCTAA
AA sequence Show only first row Show all	>Lus10034644 pacid=23162771 polypeptide=Lus10034644 locus=Lus10034644.g ID=Lus10034644.BGIv1.0 annot-version=v1.0 MPESSNTANGTAAGNKMKKNTTVSGSGCTAEVSWKVPVPAAIRSLADWEWKKVKVKKMNQTAASTASRPLIPPPSQSKLQRTMEKKEIGTSEQLRIVDSV CSIATARSVSRRGKITINPREREMVIEMLMIVNGFKMEDRQQDRYHDDWRLDIDDLSYEQLLALTDRIGYVTTGLKEAEIGKCISQFKLSVLGELSCQIG TTLGKKCTVCQEEFEGGNELGKLECGHGFHLECIKQWLANKNTCPVCKTEPFARG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17970			RING/U-box superfamily protein...		Lus10034644 [exp]	0	1
AT4G12760			unknown protein		Lus10001181 [exp]	7.2	0.9049
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	7.3	0.8938
					Lus10034398 [exp]	9.7	0.9089
AT5G01010			unknown protein		Lus10042743 [exp]	16.1	0.8888
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10025018 [exp]	17.8	0.8448
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	20.8	0.8931
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	20.8	0.8787
AT1G76480			unknown protein		Lus10006035 [exp]	21.4	0.8850
AT4G37560			Acetamidase/Formamidase family...		Lus10011529 [exp]	23.2	0.8519
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	23.3	0.8442

Compare expression of checked genes

Lus10034644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.