Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55950 172 / 3e-47 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 97 / 1e-21 CCR4 CRINKLY4 related 4 (.1) AT3G09780 71 / 3e-13 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT3G59420 71 / 4e-13 ACR4 crinkly4 (.1) AT2G39180 64 / 1e-10 CCR2, ATCRR2 CRINKLY4 related 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040663 [exp] 409 / 1e-136 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 407 / 9e-136 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10034647 [exp] 351 / 3e-112 AT1G73990 868 / 0.0 signal peptide peptidase (.1) Lus10028285 [exp] 179 / 8e-50 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1) Lus10040201 [exp] 133 / 3e-34 AT3G55950 359 / 8e-115 CRINKLY4 related 3 (.1) Lus10036524 [exp] 74 / 8e-14 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10041404 [exp] 73 / 1e-13 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10000764 [exp] 67 / 1e-11 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 62 / 5e-10 AT3G59420 1258 / 0.0 crinkly4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252400 [exp] 283 / 4e-88 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 230 / 3e-68 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 224 / 3e-66 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 98 / 5e-22 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 83 / 7e-17 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.016G089200 [exp] 73 / 9e-14 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.010G221200 [exp] 69 / 1e-12 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.007G128400 [exp] 61 / 9e-10 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 54 / 1e-07 AT3G59420 1264 / 0.0 crinkly4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034646 pacid=23162913 polypeptide=Lus10034646 locus=Lus10034646.g ID=Lus10034646.BGIv1.0 annot-version=v1.0 ATGGCTGATAATCTCACACCATTCACAATATTCCTACTTCTCATTGTAGTATCTTCCTTCATTTCCACCTCTACTTCCTCCTCCCTTGTTTCCTCCTCCA CCATCGCCGTCATCCCAACGAAACCCCCAACTGTATGCGCAATTGTGGCTAAACAGCTCACTCAGTACATCAAATGTTTCCACCGCACCCATACAACTTC AATCCTACCTAATTTCTCCTTCGAATCAATCTCAGGCGGCAACCACTTATTATGTGGTCTCGTCTCTGGAGGCTTGAGCATTTTCTGTTGGGATATTGTA ATCGACGACCGGGGATACGCGAACTTCCACCCCAAGCGAATTTACCTTAGTCATACAATCGCTTTGACAGATTTGACAGTCGGCATTACAGACCAGATTT GCGCCAGAGAGGTTGATTCCGGGACTGCAAAATGCTGGAGAGGTTTTGGGATTTCGGGTCATCCTGATCCAGGTTTGTCTTTCAAGACCATTACTTTTGG CGATGAGTTTGTGTGCGGGATTTTGAAGAATGACAGTACGGTTAGCTGTTGGGGTTACAATTCCGCCACAATTCAGTCTCAATTTGGAGATTTGAAAATG GAGAGTTTAGTTGCTTCGAAGACTCACATGCATGTTTGTGGAATTACAAATTCAGGGGATTTGGTATGCAAAGGGAGTAATGAATCTGGGCAATTAGATG TTCCAGTGAATTCGAATTTTGATTTCACTAGTTTAGCGGCCGGACCAGACTTCAATTGTGCGATTAAGATGCACAAGCTGACTTGTTGGGGGACAGGAGT GAATCGGGTTGGACTTAACGTAACTCGTCTTAGCGACATAGATACATTTGTTTCGGTCATCGCTAGCTCGGATTATATATGCGGCTTGGACTTGAATAGC ATAGCGGTCAAATGTTGGGGCATCGGATGGCCTGATTTTGACGGTAAGCCGACAGTGCTTCCGTTAGGGGAAGTGATTCCTGGTCCTTGTGTTCAATCTT GTCCTTGCCACTTAATTACAGATTCTTGTACAATGTGTTCCAACAGTGGTATTATCTGCGAGCCATGCCCGACTCCATCACCTCCGTTTGAAGGTTCCAA ATATGCTCCTCAATTGTTGCCAGTGTGCTTCCCAAGTTAG
AA sequence Show only first row Show all	>Lus10034646 pacid=23162913 polypeptide=Lus10034646 locus=Lus10034646.g ID=Lus10034646.BGIv1.0 annot-version=v1.0 MADNLTPFTIFLLLIVVSSFISTSTSSSLVSSSTIAVIPTKPPTVCAIVAKQLTQYIKCFHRTHTTSILPNFSFESISGGNHLLCGLVSGGLSIFCWDIV IDDRGYANFHPKRIYLSHTIALTDLTVGITDQICAREVDSGTAKCWRGFGISGHPDPGLSFKTITFGDEFVCGILKNDSTVSCWGYNSATIQSQFGDLKM ESLVASKTHMHVCGITNSGDLVCKGSNESGQLDVPVNSNFDFTSLAAGPDFNCAIKMHKLTCWGTGVNRVGLNVTRLSDIDTFVSVIASSDYICGLDLNS IAVKCWGIGWPDFDGKPTVLPLGEVIPGPCVQSCPCHLITDSCTMCSNSGIICEPCPTPSPPFEGSKYAPQLLPVCFPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10034646 [exp]	0	1
AT1G75640			Leucine-rich receptor-like pro...		Lus10033926 [exp]	11.0	0.6908
					Lus10006239 [exp]	54.1	0.5250
					Lus10011438 [exp]	105.0	0.5125
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	142.5	0.4955

Compare expression of checked genes

Lus10034646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.