Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73990 815 / 0 SPPA1, SPPA signal peptide peptidase (.1) AT3G55950 167 / 3e-42 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT5G47850 86 / 8e-17 CCR4 CRINKLY4 related 4 (.1) AT2G39180 77 / 6e-14 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT3G59420 71 / 3e-12 ACR4 crinkly4 (.1) AT3G09780 64 / 6e-10 CCR1, ATCRR1 CRINKLY4 related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021721 [exp] 1192 / 0 AT1G73990 871 / 0.0 signal peptide peptidase (.1) Lus10007970 [exp] 851 / 0 AT1G73990 821 / 0.0 signal peptide peptidase (.1) Lus10013332 [exp] 554 / 0 AT1G73990 626 / 0.0 signal peptide peptidase (.1) Lus10013334 [exp] 550 / 0 AT1G73990 615 / 0.0 signal peptide peptidase (.1) Lus10013333 [exp] 544 / 0 AT1G73990 612 / 0.0 signal peptide peptidase (.1) Lus10034646 [exp] 384 / 2e-124 AT3G55950 178 / 2e-49 CRINKLY4 related 3 (.1) Lus10040663 [exp] 380 / 1e-117 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10018242 [exp] 369 / 4e-113 AT3G55950 632 / 0.0 CRINKLY4 related 3 (.1) Lus10013336 [exp] 195 / 3e-54 AT1G73990 231 / 2e-69 signal peptide peptidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G047500 [exp] 858 / 0 AT1G73990 847 / 0.0 signal peptide peptidase (.1) Potri.001G252400 [exp] 261 / 6e-74 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.010G188600 [exp] 176 / 3e-45 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 172 / 4e-44 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.019G078300 [exp] 81 / 4e-15 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.013G103300 [exp] 80 / 7e-15 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.010G221200 [exp] 67 / 4e-11 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G089200 [exp] 64 / 6e-10 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.007G128400 [exp] 61 / 5e-09 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.017G029900 [exp] 58 / 4e-08 AT3G59420 1264 / 0.0 crinkly4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF01343 [flax] [poplar] Peptidase_S49 Peptidase family S49
Representative CDS sequence Show only first row Show all	>Lus10034647 pacid=23162788 polypeptide=Lus10034647 locus=Lus10034647.g ID=Lus10034647.BGIv1.0 annot-version=v1.0 ATGGTTGTCGATTTTACACCATTCACATTTTTTATTTTCACTTTGGTCTCTTATTCCCTCATTTCCACCTCCATTCCCACCTCTCTCGATTCCGGTTCCT CCTCCACTATCGCCGTCACTGCAACGAACCCCCCAGTTGTGTGCGGAATTGTCGCTGGGCAGCCCAATCGGTACATCAAATGTTTCCACCATGGCCAAAC AACTTCGCTCCTACCCAACTTCTCCTTTGAATCAATCTCAGCGGGGTACGATTTACTATGTGGTCTCCTCTCTGGAGGCTTGAATATTTTCTGTTGGAAT ATCTTAATCGACGGTCGAGGCAACGTGAACTTCCAGCGCAAGCGAATTTACCATAATGATACAGTCGCTTTGACAGATTTGATCACTCTCGGTGGCAACA ACCAAGTTTGTGCCAGAGAGGTTGATTCCGGGATAGCAAAATGCTGGCGAGGTAAACAACGGCCGCAACCTGATCCAAACTTGTCTTTGACTACGATCAC TGCTGGCATTGATTTTGTGTGTGGGATTACGAAAAATGACGGTCGGGTTTACTGCTGGGGGAATGATCCCAATATCGGGGGTCTGTTTATAACTTCGAAA ATGGAGAGTTTAATTGCTTCAAAAAATCACCGGCATATGTGTGGAAATACAAATTCAGGAGATTTGGTATGCAAAGGGAGTAATGAATCCGGCCAATTAA ATGTTCCAGTGAATTCCAATTTTGATTTCTCTGGTTTAGCTGCCGGATCAGATTTTAATTGTGCAATTAAGAAGCATAGTTTGACCTGTTGGGGAATAGG AGTGAATCGGGCTGGACTTAACGCCACTGGTAACGAAGATCGGTTTGATTCTGTTATAGCTAGTAAGGATTACATTTGCGGCTTGAACAGCCCGAACCAC ACGGTCTCATGTTGGGGTATCGGATGGATCGGTTTTGACGATAAACCAATTGAGCTTCCGTTAGGACAACCTCCGCCATCTTCCTCTTTTCCGGCGATGT CCAATTTCCTCCTCATGTACTCTTCTCCTCACCTCACAGCCTTCAGCCCCCATACATCCACTCCCCTTCTTCTCTCCTCCAAGTCTCCCCGTTCTCACTC CGCCGCCCACTGCCGTCTGATTTCTCCGTCCACTCCTAATCCTCTCCTTCATTCCAAACTCCGCTGGAGGAGCTTATCTGTTCGCGCCTTTGATGAGACT AAACCAGGAGAGGACACGAAAATCGAGTCGGAGGATGATAAACAGGATGAAGTTACAATCGCGAAGAAGCCGCTCGTTGATTATCCTGAGGGGGAGTTTG AGTTTAAGGAGGTTGGACTCTGGACTACCTTTCTAGTGAAGATTCGGATGTTGTTTGCTCTCCCTTGGGAGCGAGTAAAAAAGGGCAGTGTTCTCACTAT GAAATTAAGGGGCGAGATATCTGATCAGCTGAAGAGCCGTTTCTCTTCAAGGCTATCTCTGCCTCAGATTTGTGAGAATTTCATTAAAGCTGCTTATGAT CCTCGCATTTCCGGTATTTATCTGCATATAGACTCCTTAGCGTGTGGTTGGGGTAAAGCTGAAGAAATCCGGAGGCATATATTGGATTTCAAGAAATCAG GGAAGTTCATTGTTGCCTACACCCCTACTTGCGGGGAGTTGGAGTACTATCTAGCCTGTGCTTGTTCAGAGTTATATGCCCCTCCGAGTGCCTATTTCTC GTTATATGGCTTTGCTGTTCAATCAGTTTCTATTGCAGGTGTCCTTGAGAAAGTTGGGATTCAACCGGAAGTGCAGAGGATCGGTAAATACAAAAGTGCG GGTGATCAACTAATCCGTAAAAGTATGTCGGAAGCAAACTGTGAGATGCTGACTGCATTACTTGATGACATCTACGGGAATTGGCTGGACAAAGTTTCTT CTGAAAGAGGCAAAACAAGAGAATATTTGGAGAACTTCATTAGTGAAGGAGTCTACCAAGTCGAGAGGCTGAAAGACGATGGCTTCATAACAGATATACT CTATGATGATGAGGTCACTTCACTGTTGAAAGAGAAACTTGGTGTAAAAAAGGAGAAAGATCTTCCTACTGTCGATTACAGGAAATATTCAAGAGTTAGG ACCTGGACTCTTGGTTTAACTGGTGGTAAAGACCAAATAGCCGTGATCCGTGCATCTGGGTCCATTAGTCGTGTTCGGGGTTCATTTAGTTCTGGCGGTA TCATTGGGGAGCAATTTATTGAGAAGATACGATCTGTCAGAGAATCTAAAAGATATAAAGCTGCTATCATCAGAATTGACAGTCCCGGAGGTGATGCCCT AGCATCTGACTTAATGTGGAGGGAAATCCGTCTTTTAGCTGCTTCCAAACCTGTAGTCGCTTCAATGGTTGATGTTGCAGCAAGTGGAGGGTACTATATG GCAATGGCAACAGATGCTATCGTTGCTGAAAATTTGACCATAACCGGTTCCATCGGTGTAGTTGCAGCAAAGCCCGCCTTCGGGAAGCTTTATGAAAAAA TCGGGTTCAACAAGGAGATCATATCCAGGGGAAGATATGCGGAACTTTTTAAAGCTGACCAGCGACCTTTCAACCCTGATGAAGCAAAGCTATTTGAAAA GTCAACTCAGAATGCATACAAGCAATTTCGTGACAAGGCTGCACTTTCAAGATCGATGGATGTGGATGAGATGGAAAGTGTGGCACAAGGCAGAGTCTGG ACGGGTATACAAGCAGCATCACGAGGTCTAGTTGATGCAACAGGCGGCCTCTCACGTGCCACCGCTATCGCAAAACTCAAGGCCAATATACCTCAAGACA AACCGGTAACCCTCGTGGAGCTGTCGAGGCCGGCTACAACTCTACCGGAGCTGTTAAGTAGCATAAGCAGCTCCTTTAGTGGAGTTGACAGCAGTCTGAG AGAAGTAGTACAGGAGTTGACGGTTACCGAAGGAGTTCAAGCTCGGATAGAAGGAATAATGTTGCAGAGATTGGGAGGAGGAGGTCCATATGGAAACCCC ATTATTAGTTTGATACAAGACATTTTAGGATCCATCTGA
AA sequence Show only first row Show all	>Lus10034647 pacid=23162788 polypeptide=Lus10034647 locus=Lus10034647.g ID=Lus10034647.BGIv1.0 annot-version=v1.0 MVVDFTPFTFFIFTLVSYSLISTSIPTSLDSGSSSTIAVTATNPPVVCGIVAGQPNRYIKCFHHGQTTSLLPNFSFESISAGYDLLCGLLSGGLNIFCWN ILIDGRGNVNFQRKRIYHNDTVALTDLITLGGNNQVCAREVDSGIAKCWRGKQRPQPDPNLSLTTITAGIDFVCGITKNDGRVYCWGNDPNIGGLFITSK MESLIASKNHRHMCGNTNSGDLVCKGSNESGQLNVPVNSNFDFSGLAAGSDFNCAIKKHSLTCWGIGVNRAGLNATGNEDRFDSVIASKDYICGLNSPNH TVSCWGIGWIGFDDKPIELPLGQPPPSSSFPAMSNFLLMYSSPHLTAFSPHTSTPLLLSSKSPRSHSAAHCRLISPSTPNPLLHSKLRWRSLSVRAFDET KPGEDTKIESEDDKQDEVTIAKKPLVDYPEGEFEFKEVGLWTTFLVKIRMLFALPWERVKKGSVLTMKLRGEISDQLKSRFSSRLSLPQICENFIKAAYD PRISGIYLHIDSLACGWGKAEEIRRHILDFKKSGKFIVAYTPTCGELEYYLACACSELYAPPSAYFSLYGFAVQSVSIAGVLEKVGIQPEVQRIGKYKSA GDQLIRKSMSEANCEMLTALLDDIYGNWLDKVSSERGKTREYLENFISEGVYQVERLKDDGFITDILYDDEVTSLLKEKLGVKKEKDLPTVDYRKYSRVR TWTLGLTGGKDQIAVIRASGSISRVRGSFSSGGIIGEQFIEKIRSVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMVDVAASGGYYM AMATDAIVAENLTITGSIGVVAAKPAFGKLYEKIGFNKEIISRGRYAELFKADQRPFNPDEAKLFEKSTQNAYKQFRDKAALSRSMDVDEMESVAQGRVW TGIQAASRGLVDATGGLSRATAIAKLKANIPQDKPVTLVELSRPATTLPELLSSISSSFSGVDSSLREVVQELTVTEGVQARIEGIMLQRLGGGGPYGNP IISLIQDILGSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10034647 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10021721 [exp]	1.0	0.9301
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	6.5	0.8659
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	6.9	0.8518
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	9.2	0.8604
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10041385 [exp]	9.4	0.8377
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10035770 [exp]	10.9	0.8472
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	11.5	0.8118
AT5G26670			Pectinacetylesterase family pr...		Lus10000269 [exp]	11.8	0.8512
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10007308 [exp]	19.3	0.8485
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	21.7	0.8396

Compare expression of checked genes

Lus10034647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.