Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42660 1057 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G67320 92 / 5e-19 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G11160 84 / 4e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 81 / 6e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 82 / 1e-15 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 76 / 1e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 78 / 2e-14 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 78 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 76 / 4e-14 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G29830 72 / 4e-13 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021720 [exp] 1785 / 0 AT3G42660 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10018458 [exp] 85 / 2e-16 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 85 / 2e-16 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 80 / 7e-16 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 82 / 8e-16 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 80 / 8e-16 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 82 / 1e-15 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024972 [exp] 76 / 7e-14 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10043473 [exp] 75 / 2e-13 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065200 [exp] 1282 / 0 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.019G087200 [exp] 89 / 2e-18 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G045500 [exp] 82 / 1e-15 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 79 / 1e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 79 / 6e-15 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G050100 [exp] 78 / 1e-14 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.010G255400 [exp] 77 / 3e-14 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 77 / 6e-14 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 74 / 7e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 75 / 1e-13 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0434 [flax] [poplar] Sialidase PF12341 [flax] [poplar] Mcl1_mid Minichromosome loss protein, Mcl1, middle region
Representative CDS sequence Show only first row Show all	>Lus10034648 pacid=23162702 polypeptide=Lus10034648 locus=Lus10034648.g ID=Lus10034648.BGIv1.0 annot-version=v1.0 ATGAAGATCCGAACACTGAAGCTACGAGAAGCGCACAAGCCCAACGCTTACGGGGCCAATGGATCTTCTTCCTTCTGCTCTATCCTGTGGGACCACCAAG CCAGCCACCTGGCCACTGCTTCCTCCTCCGATACGGGGATCTCCATCCACGACGCCTTGTTGCCTTCCAACACGCCCAAGATTCTCCGGCACCACCGTGA TGGTGTCACCGCTCTTGCCCTCAGCCCTAACTCCACTTGCCTCGCCTCTGGATCTATCGACAACTCTGTCAAGCTCTACAAATTTCCCAGTGGAGATTTT GACACAAACATCACTAGGTTCACACTTCCAATTCGTGCACTTGCATTCAATAAGTCTGGGAGCATGCTGGCAGCAGCGGGTGATGATGATGGCATTAAGC TGATAAATACTGTGGATGGTTCAATTGCACGAGTTCTGAAAGGACACAAAGGATCTGTCACTGGATTAGCTTTCGATCCTGTAGGTGACTACTTGGCATC AATTGATTCCATGGGGACAGTAATGTTCTGGGAATTACAGTCCGGCACTGTATTACATACCCTTAAAGGCGTAGCTCCTAATACTGGCCTAGATACTTCT GCTGTTAATGTACTAAGCTGGAGTCCTGATGGGGAGACACTGGCAGCTCCTGGACTGAAGAATGACGTGGTAATGTATGATAGAGACACAGCTGAAAAGA TGTTTACATTAAGAGGTGATCATTTGCTACCTATTTGTTTCTTGTCCTGGTCCCCTAACGGAAAGTATATGGCTACATCAGGATTGGATAGACAGGTTCT TATATGGGATGTCGTTAAGAAGCAGGATATTGACCGACATAAATTTGAAGATAGAATATGTAGTATGGCGTGGAAACCAGTAGGTAATACGTTGGCTGTT ATTGATGTTTCTGGAAAATTTGGCCTGTGGGAATCAGTTGTTCCATCATCGATGAAATCTCCCACGGAAGACATTCCATTGAACTCAAACAAGAGTAACG GGGTACTTTTATTTGAAGAAGAGGGTGAGGAGCCCAGTTCATCTGGTAGTCTGAGTGATCTTGGTGAAGATAACCTAGGTGATTCAGCCCCACCAAGCAG GAAAAGAATCCGTAAGCGGTCAGAATTTGATGAAGACCTGACTGATAATACACTTGATGATTTTAGCATGCATCGTCGAAATGTGGCTCCCAAAAGAGCA CACTATTCTCGTAGAGAACACCTGGACAAGGGAAACGATGAACTAAGAAGCACAATGACATCTGCAAGGTCAAAGATGCAGGAAGCTTTCCAGCCAGGAT CCACTCCTGTGCAGCCAGGGAAGAGGCGCTTTTTGTGCTATAACATGCTTGGAACTATCACGACAATGGAATATGACGGGTACTCTCATATAGAGATAGA CTTCCATGATACCAGTAGAGGACCACGGGTTCCTGCAATGACAGATCATTTTGGTTTCACAATGGCTTCTCTAAATGAAAATGGAAGCGTTTTTGCAAAT CCTTGTAAGGGAGATAAGAAGATGAGTACCCTAATGTATCGCCCATTCAGCAGCTGGGCGAACAACAGTGAGTGGTCTATGCGTTTCGAAGGAGAAGAAG CCAAGGTTGTTGCACTTGGTACTAATTGGGTTGCTGCAATCACTAGTCTAAATTATCTCCGCATCTTTACAGAATGCGGTTTGCAGAAACATATTATTTC TCTAAATGGCCCAGCAGTAACTGCATCAGGCTGCAAAAATCAGCTCGCAGTTGTCACTCATGCCGCTGATTCTCTTCCATCAAGTGATCAGTTGCTTGAA TTCCATGTATTCAATATGCAAAACGGTACAAAGCCCTCCAGTGGACGGCTTCCATTGACTCCGGGTTCATCTCTTATTTGGTTTGGGTTCAGTGAGGAAG GGCAATTGAGTTCATTTGATTCCAAGGGTGTTTTGAGGGTCTTCACAAGCCATTATGGTGGCAGTTGGCTCCCGCTGTTCAGTGCTAATAAATCAAAGAA GTCGGATGAGAACTACTGGATGACTGGACTGAATGCAAGCAAGTTATTTTGTATTGTTTGCAAGAATCCTGAAGTATTTCCTCAGGTGATGCCCAAACCT ATTATCACTTTACTGGATCTGTCTTTCCCTCTTGCATCCTCTGATCTAGGAGCAGAGACCCTTGAGAACGAATTTATCATGAACGATCTACGTCTCTTTC AGATCCAAAGAAGAATAGAAGAAGGTTCAAGTGACGGTAGGAACCTCGATGACGAAGCATTCAACACAGAGGCAGCTCAAGACAGATGCATCTTGAGGCT CATTGCCTCTTGCTGCAACAGCGACAAACTTGCACGAGCCACCAAGCTCGTAACACTCCTGACGTTAGACAAGTCAGTGAAAGGAGCAATAAAGCTCGTA ACTGCACTCAAACTTCCTAATCTTGCAGATCGCTTCAATAGCATACTTGAGGAAAGGCTACTGAATGAAACGAAAGAGATGTCTGCCGTTCCTTGCAAAT CTTTTGATGAGCCAAAGGAAGCTAAAGTTGCAGCAAGCCAGAGTTGTTCAGCTAGTGGAAGAAGGGAAGGATCGGATGGTGGCGTCCCAGCGATATTTTC AGCTCCTCATTTCATCAGGAAAGTGAATAGAAATAATGAAGAGGGGAAGGGAAAAGATCATAATTATAACCGAACTGCTGCTATTGGAGACGAAAGTGGC AGTACTAGTACAGGTCTGCCCACACTTCCAGGGAAGTTCAATGACGAATCGACAGAGCTCAAAACGACAGCAGGAAGCCTGGAACAAAAAGCTCGAGGAG CGTCGAATGCGGGTTTGAAGGTTGGAAACAAGAATGCAGCTACAGGGAAAGAAGGGGCTGATCAAATGAAACGTTCTATAAACCCGTTTAAGAAGTCAGC AAAGTGA
AA sequence Show only first row Show all	>Lus10034648 pacid=23162702 polypeptide=Lus10034648 locus=Lus10034648.g ID=Lus10034648.BGIv1.0 annot-version=v1.0 MKIRTLKLREAHKPNAYGANGSSSFCSILWDHQASHLATASSSDTGISIHDALLPSNTPKILRHHRDGVTALALSPNSTCLASGSIDNSVKLYKFPSGDF DTNITRFTLPIRALAFNKSGSMLAAAGDDDGIKLINTVDGSIARVLKGHKGSVTGLAFDPVGDYLASIDSMGTVMFWELQSGTVLHTLKGVAPNTGLDTS AVNVLSWSPDGETLAAPGLKNDVVMYDRDTAEKMFTLRGDHLLPICFLSWSPNGKYMATSGLDRQVLIWDVVKKQDIDRHKFEDRICSMAWKPVGNTLAV IDVSGKFGLWESVVPSSMKSPTEDIPLNSNKSNGVLLFEEEGEEPSSSGSLSDLGEDNLGDSAPPSRKRIRKRSEFDEDLTDNTLDDFSMHRRNVAPKRA HYSRREHLDKGNDELRSTMTSARSKMQEAFQPGSTPVQPGKRRFLCYNMLGTITTMEYDGYSHIEIDFHDTSRGPRVPAMTDHFGFTMASLNENGSVFAN PCKGDKKMSTLMYRPFSSWANNSEWSMRFEGEEAKVVALGTNWVAAITSLNYLRIFTECGLQKHIISLNGPAVTASGCKNQLAVVTHAADSLPSSDQLLE FHVFNMQNGTKPSSGRLPLTPGSSLIWFGFSEEGQLSSFDSKGVLRVFTSHYGGSWLPLFSANKSKKSDENYWMTGLNASKLFCIVCKNPEVFPQVMPKP IITLLDLSFPLASSDLGAETLENEFIMNDLRLFQIQRRIEEGSSDGRNLDDEAFNTEAAQDRCILRLIASCCNSDKLARATKLVTLLTLDKSVKGAIKLV TALKLPNLADRFNSILEERLLNETKEMSAVPCKSFDEPKEAKVAASQSCSASGRREGSDGGVPAIFSAPHFIRKVNRNNEEGKGKDHNYNRTAAIGDESG STSTGLPTLPGKFNDESTELKTTAGSLEQKARGASNAGLKVGNKNAATGKEGADQMKRSINPFKKSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	0	1
AT5G52910		ATIM	timeless family protein (.1)		Lus10014946 [exp]	1.0	0.9842
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	1.4	0.9829
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	1.7	0.9818
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	3.5	0.9793
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	5.5	0.9596
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	7.1	0.9609
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10036983 [exp]	8.9	0.9473
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	9.0	0.9532
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	9.5	0.9578
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10024521 [exp]	10.4	0.9522

Compare expression of checked genes

Lus10034648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.