Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73880 477 / 4e-166 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT5G03490 374 / 1e-125 UDP-Glycosyltransferase superfamily protein (.1) AT1G51210 369 / 3e-124 UDP-Glycosyltransferase superfamily protein (.1) AT1G06000 280 / 1e-89 UDP-Glycosyltransferase superfamily protein (.1) AT2G15480 261 / 9e-82 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 258 / 1e-80 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G36750 253 / 1e-78 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36800 253 / 2e-78 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT4G34131 246 / 5e-76 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 246 / 1e-75 UGT73B1 UDP-glucosyl transferase 73B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021718 [exp] 578 / 0 AT1G73880 314 / 8e-105 UDP-glucosyl transferase 89B1 (.1) Lus10036837 [exp] 402 / 2e-136 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10036840 [exp] 402 / 2e-136 AT5G03490 468 / 2e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10013500 [exp] 362 / 8e-121 AT1G73880 379 / 2e-127 UDP-glucosyl transferase 89B1 (.1) Lus10007972 [exp] 319 / 2e-105 AT1G73880 355 / 1e-119 UDP-glucosyl transferase 89B1 (.1) Lus10020124 [exp] 259 / 4e-81 AT2G15490 301 / 4e-97 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10003322 [exp] 259 / 2e-80 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10026927 [exp] 256 / 6e-80 AT2G15480 310 / 2e-100 UDP-glucosyl transferase 73B5 (.1.2) Lus10014437 [exp] 250 / 5e-77 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065100 [exp] 503 / 4e-176 AT1G73880 539 / 0.0 UDP-glucosyl transferase 89B1 (.1) Potri.010G137000 [exp] 429 / 4e-147 AT5G03490 482 / 4e-168 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G303600 [exp] 277 / 6e-88 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 277 / 1e-87 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G098966 [exp] 276 / 3e-87 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 263 / 1e-82 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G099032 [exp] 263 / 3e-82 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303300 [exp] 260 / 2e-81 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302400 [exp] 251 / 7e-78 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.018G008900 [exp] 249 / 4e-77 AT2G15490 312 / 1e-101 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10034650 pacid=23162878 polypeptide=Lus10034650 locus=Lus10034650.g ID=Lus10034650.BGIv1.0 annot-version=v1.0 ATGACGGTGGCTGCCATCACCCTCCCGCACATTCTCATCTTCCCATACCCAGCCCAAGGTCACCTAATCCCAATCCTAGACTTCGCCCATTACCTTGCCC TCCGCCGTCAACTTCATATCACAATCCTCGTCACCCCTAAAAACCTCCCTCTCCTCCAGCCCCTCCTCTCCCGCCACCCTTCAATCCAACCCCTCACCCT CCCTTTCCCGGACACCCCTCACATCCCTCCCGGCGTCGAAAACACCAAAGATCTCCCTCCTTCCTTAACCAAATCATCTCATGTCTCCTTCATGTACGCC CTCGCCGGTCTCCGCTCCCCTCTTCTCAATTGGTTCCAAACCACCCCTTCCCCTCCTTCCGTCATCATCTCCGACATGTTCCTCGGCTGGACTCACCACC TCGCCACCGACCTCGGCATTCCACGAATCGTCTTCTCCCCTTCCGCCGCTTTCGCCTTGTCAGTGATCTACCACCTCTGGCGTAACATGCCTCAGCTCCC CGAAAGCCCCGACGAATCAATCACGTTCCCAGATCTCCCGAATTCCCCCAGTTGGATTAAGTCCCAGCTCTCCCCCATTTACCGCTCCTACGTCCCCGGA GATCCCCTATCGGAATTCGTGAAAGACGGTTTCCTCGCTGATATCGACAGCTGGGGAATCGCGTTCAATTCGTTCGCAGGATTGGAATCGAAATATCTAG ACTATTTGAAAATCGAATTGGGCCACGATCGGGTATGGGCGGTAGGTCCTTTACTCTCGCCACCGTCGGAATCCGTCGCGTCAAGAGGTGGGACCAGTTC GGTATCGGTAGCGGATCTTGAGGCGTGGCTGGACACGTGTCAGGAGGGTAAGGTGGTTTACGTCTGCTTCGGGAGCGAGGCGGTGCTGACCGTGGATCAG AGCAACGAGCTGGCCTCGGGATTGGAAAAGAGCGGGGTGCAATTCGTGTGGAGGGTGAAGGACGTGGAGGGAGAACGTCCGTCGATTCCGGAAGGGTTCG AGGATCGGGTGGCAGGAAGAGGAGTGGTGATAAGGGGATGGGCCCCGCAGGTGATGATACTGAGTCACCGAGCCGTGGGAGCGTTCCTGACTCACTGCGG TTGGAACTCGGTGCTGGAAGGGATCGTGGTTCTGAAAGGGATCTTCGCCGGAGTGGCGATGCTGGCGTGGCCGATGGGGGCGGATCAGTTTACTGATGCG ACGTTGCTGGTGGAGGAGCTGAAGATGGCGGTGAGGGTCTGTGAAGGGAAGGAGGCGGTGCCTGATTCGGAGGTGGTGGCGAGTCAGCTGAGAGAGTTGA TGGAGGAGGATAGAGAGGAGAGGAAGGTGGCGAAGGAGCTGAGCTTGGCGGCCAAGGAGGCCGTCGGCGAAGGGGGGAGTTCGGTGAAAGATATGGAGTC GTTGGTGGAGCAATTGGTGCAATTGAATTCTACATCATCGGATTAA
AA sequence Show only first row Show all	>Lus10034650 pacid=23162878 polypeptide=Lus10034650 locus=Lus10034650.g ID=Lus10034650.BGIv1.0 annot-version=v1.0 MTVAAITLPHILIFPYPAQGHLIPILDFAHYLALRRQLHITILVTPKNLPLLQPLLSRHPSIQPLTLPFPDTPHIPPGVENTKDLPPSLTKSSHVSFMYA LAGLRSPLLNWFQTTPSPPSVIISDMFLGWTHHLATDLGIPRIVFSPSAAFALSVIYHLWRNMPQLPESPDESITFPDLPNSPSWIKSQLSPIYRSYVPG DPLSEFVKDGFLADIDSWGIAFNSFAGLESKYLDYLKIELGHDRVWAVGPLLSPPSESVASRGGTSSVSVADLEAWLDTCQEGKVVYVCFGSEAVLTVDQ SNELASGLEKSGVQFVWRVKDVEGERPSIPEGFEDRVAGRGVVIRGWAPQVMILSHRAVGAFLTHCGWNSVLEGIVVLKGIFAGVAMLAWPMGADQFTDA TLLVEELKMAVRVCEGKEAVPDSEVVASQLRELMEEDREERKVAKELSLAAKEAVGEGGSSVKDMESLVEQLVQLNSTSSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10034650 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10022163 [exp]	6.2	0.7616
					Lus10011452 [exp]	16.1	0.7473
					Lus10004849 [exp]	18.8	0.7287
					Lus10018224 [exp]	21.6	0.7279
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10004812 [exp]	27.4	0.7191
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	28.6	0.6985
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10007246 [exp]	35.7	0.7145
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	39.4	0.6652
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	40.7	0.6668
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009003 [exp]	41.5	0.7106

Compare expression of checked genes

Lus10034650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.