Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15740 747 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 733 / 0 O-fucosyltransferase family protein (.1) AT1G14020 597 / 0 O-fucosyltransferase family protein (.1) AT2G03280 547 / 0 O-fucosyltransferase family protein (.1.2) AT2G37980 388 / 9e-129 O-fucosyltransferase family protein (.1) AT5G01100 378 / 5e-125 O-fucosyltransferase family protein (.1) AT1G22460 376 / 5e-125 O-fucosyltransferase family protein (.1) AT3G54100 376 / 5e-124 O-fucosyltransferase family protein (.1) AT5G35570 370 / 1e-121 O-fucosyltransferase family protein (.1) AT5G64600 361 / 8e-120 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021717 [exp] 967 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 868 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 867 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 622 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 615 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 612 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 612 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 584 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 576 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G064200 [exp] 830 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 829 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 768 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 756 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 600 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 590 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 397 / 4e-131 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 390 / 5e-131 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 384 / 4e-127 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 380 / 6e-127 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10034651 pacid=23162857 polypeptide=Lus10034651 locus=Lus10034651.g ID=Lus10034651.BGIv1.0 annot-version=v1.0 ATGGGAGGAATGGTTAAAGGAGTGGATAGCAAGGTTAAGAGTTTGTCAAAGTCTAAGATGAAGCTGTGGATGATTCGTGCCACTACTTCGGTCTTGTTGT GGACCTGTATCGTTCAATTGACGACGGTCGGCGAGTTGTGGGGGCCTAGGGTTCTGAAAGGATGGCCTTCGTGTTTCACATCGGAATCAGCTGCTCTTAT GCAGGAGAAAATTTCTGCCGTTCCTGGTCTCGTTTTGCCGCCCAAGAGGGTTTACAGAAACAACGGATATCTTATGGTATCCTGCAATGGAGGACTGAAT CAAATGAGGTCTGCGATATGTGACATGGTCGCTATAGCAAGATACTTGAATGTCACTCTTATTGTCCCGGAGTTGGACAAGACATCTTTTTGGGCTGATC CCAGTGAATTCCAAGACATATTTGACGTTGATCATTTCATCACATCGCTCAGAGATGAGGTTCGGATATTGAAGGAATTACCTCCTCGGCTTAAGAGGAG AGTGGAACTAGGGATGGCTCACTCCATGGCACCGGTTAGTTGGTCGGATATATCCTACTATGGTACCCAGATTCTTCCTCTGATACAGAAGTACAAAGTG GTTCATCTAAATAGAACGGATGCTAGACTTGCAAATAATAATCAGCCTCTGGAGATTCAGAAGCTACGCTGTCGAGTGAATTTCGGAGCGCTTAGATTCA CTCCTCAAATTGAGGAGTTGGGTAGAAGAGTTATAGGACTTCTCAAGGCTAATGGCCCTTTCTTAGTGCTTCACCTTAGATATGAAATGGATATGTTGGC ATTCTCTGGTTGCACTCAAGGTTGTAACGGTGAAGAGGTGGACGAGCTGACGAGAATGAGATATGCTTATCCTTGGTGGAAAGAGAAGGTAATAAATTCC GACCTGAAGAGGAAAGATGGACTATGCCCTTTGACTCCAGAGGAGACTGCCCTTACTTTGAGGGCACTGGACATTGACCCAAACATGCAGATCTACATAG CAGCTGGCGAAATATACGGCGCAGAGAGGAGGATGGCAAGTCTTTTAGCAGCGTATCCAAAACTGGTGAGAAAGGAAACACTATTGGAACCATCAGACCT CAGGTTCTTTCAGAATCACTCTTCCCAGATGGCAGCTTTGGATTATCTTGTTTCATTGGAGAGTGACATATTTGTGCCCACCTATGATGGAAACATGGCC AAAGTTGTTGAAGGCCACCGCAGATTTCTTGGATTCAGGAAGACGATATTGCTCCAGCGAAGTCTTCTTGTCGATTTGATAGACCGATACACCAACGGGG CACTGAGTTGGGATGAGTTTTCGGATGCTGTGAAGGAAGCTCATTCCACAAGGATGGGAACCCCTGGTAAAAGGTTAGTGATCCACGACAGGCCTAAGGA AGAGGATTACTTCTACGCCAACCCGGATGAATGTCTGCAATCATCGTCCGATGAACTTTTGAGTAGTACGTGA
AA sequence Show only first row Show all	>Lus10034651 pacid=23162857 polypeptide=Lus10034651 locus=Lus10034651.g ID=Lus10034651.BGIv1.0 annot-version=v1.0 MGGMVKGVDSKVKSLSKSKMKLWMIRATTSVLLWTCIVQLTTVGELWGPRVLKGWPSCFTSESAALMQEKISAVPGLVLPPKRVYRNNGYLMVSCNGGLN QMRSAICDMVAIARYLNVTLIVPELDKTSFWADPSEFQDIFDVDHFITSLRDEVRILKELPPRLKRRVELGMAHSMAPVSWSDISYYGTQILPLIQKYKV VHLNRTDARLANNNQPLEIQKLRCRVNFGALRFTPQIEELGRRVIGLLKANGPFLVLHLRYEMDMLAFSGCTQGCNGEEVDELTRMRYAYPWWKEKVINS DLKRKDGLCPLTPEETALTLRALDIDPNMQIYIAAGEIYGAERRMASLLAAYPKLVRKETLLEPSDLRFFQNHSSQMAALDYLVSLESDIFVPTYDGNMA KVVEGHRRFLGFRKTILLQRSLLVDLIDRYTNGALSWDEFSDAVKEAHSTRMGTPGKRLVIHDRPKEEDYFYANPDECLQSSSDELLSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15740		RRT1	O-fucosyltransferase family pr...		Lus10034651 [exp]	0	1
AT4G35320			unknown protein		Lus10026561 [exp]	3.5	0.9180
AT5G59020			Protein of unknown function (D...		Lus10040721 [exp]	3.5	0.9116
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	4.5	0.9224
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	4.7	0.9359
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	4.9	0.9039
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	5.7	0.8933
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	7.1	0.9132
AT3G03210			unknown protein		Lus10010965 [exp]	7.5	0.8895
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10038423 [exp]	8.7	0.8936
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10033379 [exp]	12.1	0.9102

Compare expression of checked genes

Lus10034651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.