Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60850 157 / 2e-46 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT5G60200 113 / 6e-30 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G07640 113 / 1e-29 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT1G51700 110 / 1e-29 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G65590 113 / 2e-29 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT3G45610 111 / 2e-29 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 113 / 4e-29 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT5G66940 110 / 4e-29 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 111 / 5e-29 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 112 / 6e-29 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017882 [exp] 429 / 1e-153 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10007976 [exp] 177 / 2e-54 AT5G60850 165 / 1e-49 OBF binding protein 4 (.1) Lus10025707 [exp] 115 / 7e-30 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10015425 [exp] 111 / 6e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10016566 [exp] 112 / 8e-29 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10014001 [exp] 110 / 1e-28 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10014002 [exp] 108 / 1e-28 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10040305 [exp] 113 / 2e-28 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10036172 [exp] 109 / 2e-28 AT3G55370 109 / 3e-28 OBF-binding protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048300 [exp] 187 / 6e-58 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.012G063800 [exp] 168 / 2e-50 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.011G055600 [exp] 120 / 6e-32 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 118 / 5e-31 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.003G034200 [exp] 115 / 6e-31 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.005G134200 [exp] 114 / 1e-29 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.011G054300 [exp] 114 / 1e-29 AT5G60850 119 / 3e-31 OBF binding protein 4 (.1) Potri.004G046100 [exp] 113 / 2e-29 AT5G60850 120 / 2e-31 OBF binding protein 4 (.1) Potri.005G188900 [exp] 112 / 2e-29 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G149100 [exp] 113 / 3e-29 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10034652 pacid=23162775 polypeptide=Lus10034652 locus=Lus10034652.g ID=Lus10034652.BGIv1.0 annot-version=v1.0 ATGCAAGACATCCACTCAATTGGCGGAGGAGCAAGGTTTTTCGCCGGCGACCGGAGGTTGAGGCCGCACAACCAGCCAGTGAATTGCCCTCGGTGCGACT CCGTCAACACCAAATTCTGCTACTATAACAACTACAACCTCTCCCAGCCCCGTCACTTCTGCAAGAGCTGCCGCCGTTACTGGACCAACGGCGGCGTCCT CCGTAACGTCCCCGTCGGCGGCGGATGCCGCAAGCCCAAGCGCTCTAAGCCCAAACAGAACCCCGACTCTACTTCCGCCGTCGTCTCCACCGCCGATTTC ACAACTCAGCCGCCGGAAGATCAGCTGAATTCTCCCGATTCTCATTCCAGCAGCGAGAGCTCCAGCCTGTCCGCGACGGCAACGGAAGTTATTTCTGTTG GAAACTACTCAATTTCTGAGCAGAACAACAAGCTGATTGGGGATTCAAGTTTGAATCCGAGCTTCGAGACGGCGTCGTTTCTTGTGCAGGGAGGCGAGTG CGGAATGTTTCAGTTTCAGTTACAAGAGATGGGGAGCATAACGAGCTTAACTACTTCGAGGGCGAAGGAAACGCCGTCGTTTGACACTCCGTTGAGCCAG GGGCAGAGCAAGGACGAGGAGGAGTGGAGGATGCAGGGGATGATTGATCCTACGATTCCGGATGAGTACTTGACGGTGTTACAGAGTGGCCGATCAAGTG GTGCCGCCGGATTTGGACCGTTGGATTGGAATGAGGCGGGTGGTGGTGGAGGATATTTCGATCTTCCTCCGTCGGGCGTCGATCATGTGTACTGGAGTCA GAGTCAGTGGAATTACGACTGA
AA sequence Show only first row Show all	>Lus10034652 pacid=23162775 polypeptide=Lus10034652 locus=Lus10034652.g ID=Lus10034652.BGIv1.0 annot-version=v1.0 MQDIHSIGGGARFFAGDRRLRPHNQPVNCPRCDSVNTKFCYYNNYNLSQPRHFCKSCRRYWTNGGVLRNVPVGGGCRKPKRSKPKQNPDSTSAVVSTADF TTQPPEDQLNSPDSHSSSESSSLSATATEVISVGNYSISEQNNKLIGDSSLNPSFETASFLVQGGECGMFQFQLQEMGSITSLTTSRAKETPSFDTPLSQ GQSKDEEEWRMQGMIDPTIPDEYLTVLQSGRSSGAAGFGPLDWNEAGGGGGYFDLPPSGVDHVYWSQSQWNYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	0	1
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	4.5	0.9432
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	4.9	0.9303
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	6.9	0.9362
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10009428 [exp]	7.5	0.9386
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	7.7	0.9161
AT4G25670			unknown protein		Lus10014961 [exp]	8.5	0.9195
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10014033 [exp]	8.9	0.9115
AT1G01360		PYL9, RCAR1	PYRABACTIN RESISTANCE 1-LIKE 9...		Lus10040916 [exp]	10.5	0.9000
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	11.8	0.9078
AT5G01820		PKS24, CIPK14, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025245 [exp]	12.0	0.8955

Compare expression of checked genes

Lus10034652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.