Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08120 238 / 4e-75 MPB2C, ATMBP2C, MBP2C movement protein binding protein 2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017881 [exp] 590 / 0 AT5G08120 277 / 2e-91 movement protein binding protein 2C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G107000 [exp] 333 / 3e-112 AT5G08120 269 / 1e-88 movement protein binding protein 2C (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034653 pacid=23162911 polypeptide=Lus10034653 locus=Lus10034653.g ID=Lus10034653.BGIv1.0 annot-version=v1.0 ATGCCGGCCGGCCGGCCAGCCGTCCGGGGAATTCAAAATAGAGTCGTTTGGGAAGTCGTCATCTTCTTTCTCTCTCCTCTCCGAGTTTCGCTTGTTCTTC AATCTTCTCCACAGTACACTACAGCAGCAAGCACTCTCATTTGCGCTCTAGATTTAGCCAATTTCCCCTCCAAAAACACCAACAAGATCGCAATGTTCGA GCCCCAGAACCTGTTGGACTTGCAGGAGGAAGATTCAAGTTTCATAGACTCTTCCGTAACTCACCCACGGTTGAACAATTCTCAGTTCGCCGCCCACTTA GCCGCCACCTCTACTTCCAACCGTGGCGTCAACAATGGCAGCCTCGATCACGTCCTCTTCCAAGATCTGGTCGAGATCGTCCCTCTTGTCCAGTCCCTCA TCGATAGGAAAGCGAACAGTTCTTTTACACGGAGGGGTTCAATTGTGTACACAAAGACGCCTTCCAGAGAATCGTTGTCGAGAAAGGCGAACGATCACAA GAAGAGGAACGGAGGTCAACCTATTCCCGCGAATAAGAAAAGAGATCATGGAGACAAGGATCGATGTAAAGATTCTGGAGATGTTCAAGATATCGACAAC TTTACGGTGTTCACCTCAAGGGCTTTTGCAGCTGATAATAGTTCTGATGAGGTGATTGCATTAAGGGAACAGGTGAAAGATTTGGAGAATAAGTTGTTAG ATAGAGATGAGATCTTGAAAGAATTGGAGATTTCACAAAACCAGAATAATGCAATCCAGGCTGAATTAGATGAAATGAAACAGCTGCTTTCTGAAAAGGA TGCCGTAATAAGGTCTAATCAACTACAGCTCTCTGATATCAAGATAAAACTGGCGGACAAGCAGGCTGCACTTGAGAGGACTCAATGGGAAGCCATGACA TCGAAGAAAAAGGCCGAGAAGCTTCAAGAAGAGCTGGATGCTACTCAAGGAAACATCTCATCTTTGATGATGTTATTTGAAGGCTTGACGAAGAGTGATA CTACACCACTTAGTGAAGATTATGATATCAAACCAACCCATTTAGACTATAATCCTGATATTGATGATATGGATGCGACAGATGTGCTTGAAATGGAGGA AGCACGGCTAGCTTACATTGCAGCTGTTGCGGCAGCGAAAGAGAAACGAGACGAGGAATCAATTATTGCGGCAGCCCTTGCTAGACAACATCTTCAGTTT CTACTTTGCAAACCTAGTGGTAAAAAACACCTGAAGAAACTGGCTAATGCTGTGAGTTCTGACGCTTCGAATGCAGTGATTTATGTGCACTAG
AA sequence Show only first row Show all	>Lus10034653 pacid=23162911 polypeptide=Lus10034653 locus=Lus10034653.g ID=Lus10034653.BGIv1.0 annot-version=v1.0 MPAGRPAVRGIQNRVVWEVVIFFLSPLRVSLVLQSSPQYTTAASTLICALDLANFPSKNTNKIAMFEPQNLLDLQEEDSSFIDSSVTHPRLNNSQFAAHL AATSTSNRGVNNGSLDHVLFQDLVEIVPLVQSLIDRKANSSFTRRGSIVYTKTPSRESLSRKANDHKKRNGGQPIPANKKRDHGDKDRCKDSGDVQDIDN FTVFTSRAFAADNSSDEVIALREQVKDLENKLLDRDEILKELEISQNQNNAIQAELDEMKQLLSEKDAVIRSNQLQLSDIKIKLADKQAALERTQWEAMT SKKKAEKLQEELDATQGNISSLMMLFEGLTKSDTTPLSEDYDIKPTHLDYNPDIDDMDATDVLEMEEARLAYIAAVAAAKEKRDEESIIAAALARQHLQF LLCKPSGKKHLKKLANAVSSDASNAVIYVH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10034653 [exp]	0	1
AT4G39690			unknown protein		Lus10016813 [exp]	4.6	0.7681
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	5.2	0.7989
AT1G05430			unknown protein		Lus10006108 [exp]	18.3	0.7338
AT1G54385			ARM repeat superfamily protein...		Lus10007428 [exp]	18.3	0.7811
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	25.7	0.7359
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	28.0	0.7171
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	30.7	0.7666
					Lus10035415 [exp]	37.5	0.6253
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	38.0	0.7553
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10025689 [exp]	40.5	0.7278

Compare expression of checked genes

Lus10034653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.