Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60880 77 / 3e-16 BASL breaking of asymmetry in the stomatal lineage (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017880 [exp] 331 / 1e-114 AT5G60880 72 / 9e-15 breaking of asymmetry in the stomatal lineage (.1.2) Lus10013504 [exp] 49 / 6e-07 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048600 [exp] 103 / 9e-26 AT5G60880 87 / 4e-20 breaking of asymmetry in the stomatal lineage (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034654 pacid=23162781 polypeptide=Lus10034654 locus=Lus10034654.g ID=Lus10034654.BGIv1.0 annot-version=v1.0 ATGAGCACGACATGGACAACAAGCCCAAGCTCCAAGATCATCAGATGGCGTGTCCGCGACTGGGTTTCTTGCTTCTTGGCTTCCCGCATTCCTCTAGATG ATCATGACCCAGAAATCAGAAACATGGTACGGGACTTCAGCGGCGGGGGAAGTCAATGCCGGTATCATCATCAGAACATACGGAGAAATAGACGGAGGAA AGATCGACGGGTTGGGGAAAACATTAGTAGTGCCAAAAATCATATCATTGTCGCAGAAAAAGAGTCGGATATTAATAGAGACGGCGTTAATAACGACATG CCGTCGAAAGACCTGATGAAGCCGACCGAAACGGCGTCGGTTGAGGACTACATAGTCTTCTGCTTTGGTGAAAACGGTGCGTTTGAAGTTGTTAAGGACT GCAAAAGAAACAAGAGTCCTCACAGAAGTACTACTACTCATGATGATGATCATCATCATACAAAATCTTCGGCTGCAAAACATAACGCCAGCAGAAAGTT GAATTATGGGGATCAAGGAATTGCCTGTGGACATGAAAGCTGCAAGAAACTGTCATCATCTACAGATGGTGATTCGGAGGTCGTCATTCATCTCCATGAG GAAGAAGATAATGGCTCAAGCAAGGAAATTCGGCATCCCTTGGAAGTGATGGATGGGAACCCGTTGGGAACTGCAGATTCAGAACCCAGCTGTGATTCGA ACAAGTCGGATGACAGCAGCTCAGACTCCTTTTCATTCCCTGTATTGCAGTGGGAAGAGATGGTAGGGAGTCCAATACAGATGCCAAAACCAGAAGACTT TCACCTCAGGAAGCAGAGATTGAACTGTGCTCGCTTCCAGTGCTGTAGATTTTGA
AA sequence Show only first row Show all	>Lus10034654 pacid=23162781 polypeptide=Lus10034654 locus=Lus10034654.g ID=Lus10034654.BGIv1.0 annot-version=v1.0 MSTTWTTSPSSKIIRWRVRDWVSCFLASRIPLDDHDPEIRNMVRDFSGGGSQCRYHHQNIRRNRRRKDRRVGENISSAKNHIIVAEKESDINRDGVNNDM PSKDLMKPTETASVEDYIVFCFGENGAFEVVKDCKRNKSPHRSTTTHDDDHHHTKSSAAKHNASRKLNYGDQGIACGHESCKKLSSSTDGDSEVVIHLHE EEDNGSSKEIRHPLEVMDGNPLGTADSEPSCDSNKSDDSSSDSFSFPVLQWEEMVGSPIQMPKPEDFHLRKQRLNCARFQCCRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10034654 [exp]	0	1
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10002524 [exp]	1.7	0.9179
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	2.4	0.9059
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	2.8	0.8893
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	2.8	0.9163
					Lus10006808 [exp]	6.5	0.8706
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	8.0	0.8568
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10022277 [exp]	12.1	0.8704
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020559 [exp]	12.5	0.8335
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10031396 [exp]	14.0	0.7665
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	17.1	0.8177

Compare expression of checked genes

Lus10034654 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.