Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08100 459 / 4e-164 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT3G16150 328 / 4e-112 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT4G00590 83 / 1e-17 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT5G61540 82 / 2e-17 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034668 [exp] 582 / 0 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 309 / 2e-104 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10017879 [exp] 142 / 1e-41 AT5G08100 157 / 4e-48 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 87 / 7e-19 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10040935 [exp] 86 / 1e-18 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009560 [exp] 83 / 1e-17 AT5G61540 518 / 0.0 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10020385 [exp] 81 / 2e-16 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063400 [exp] 486 / 1e-174 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.002G122900 [exp] 333 / 4e-114 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.014G022900 [exp] 327 / 2e-111 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.014G080600 [exp] 83 / 1e-17 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G191900 [exp] 76 / 2e-15 AT5G61540 497 / 2e-177 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Lus10034655 pacid=23162736 polypeptide=Lus10034655 locus=Lus10034655.g ID=Lus10034655.BGIv1.0 annot-version=v1.0 ATGGGTTGGGCAATCGCTCTCCACGGCGGCGCCGGTGACATACCACTCTCCCTTCCACCCGACCGCCGTCTCCCCCGCGAAGCCGCTCTCCGCCACTGCC TCCAGCTCGGCGTCTCCGCTCTTCAGTCCAACTCCCACCCTCTTGACGTCGTCGAGCTCGTCGTTCGTGAATTGGAGAACCACCCACAGTTCAATGCGGG TAAGGGATCTGTACTAAGCACTGCTGGGACAGTGGAGATGGAAGCTAGCATCATGGATGGCAAAACAAAGAACTGTGGAGCAGTTTCTGGACTTACCACT GTTGTCAACGCTATCTCACTAGCACGCCTCGTCATGGATAAAACGCCTCATATCTATCTGGGGTTCCAAGGAGCTGAAGCTTTTGCAAGGGAACAAGGTG TAGAGACAGTTGATCCAAGTCATTTCATTACTCCCGAAAATATCGAGAGGCTGAAGCAGGCCAAAGAAGCTAACAGAGTCCAGATTGACTACACACAACC GATCAAGGAAGGCGAGAAGCATGATCAAACCGTGGCTGTCAACAGTAGCGGGGACAGCCAAATCGGAACAGTTGGATGCGTGGCAGTCGACAACGAAGGG AACTTAGCATCTGCAACTTCTACAGGCGGACTAGTTAATAAGATGGTGGGGAGGATCGGCGACACACCTGTGATAGGTGCAGGGACATACGCAAACAGTT ACTGTGCAGTTTCGGCCACGGGGCAAGGAGAATTTGTCATACGTGCTACTGCTGCTAGAGAAGTTGCTGCTCTTATGGAATACAAGGGTCTCTCTCTCAA GGAAGCTGCTGCTTATGTGGTTGATAAGTGTGCTCCTAAAGGCACTGTTGGATTGATCGCTGTGTCTGCTACAGGGGAAGTCACAATGCCGTTCAACACG ACTGGGATGTTTCGAGCATGTGCTACAGAAGAAGGCTACTCCGAAATCGGGATATGGCATGACGAGCAAGAGTGA
AA sequence Show only first row Show all	>Lus10034655 pacid=23162736 polypeptide=Lus10034655 locus=Lus10034655.g ID=Lus10034655.BGIv1.0 annot-version=v1.0 MGWAIALHGGAGDIPLSLPPDRRLPREAALRHCLQLGVSALQSNSHPLDVVELVVRELENHPQFNAGKGSVLSTAGTVEMEASIMDGKTKNCGAVSGLTT VVNAISLARLVMDKTPHIYLGFQGAEAFAREQGVETVDPSHFITPENIERLKQAKEANRVQIDYTQPIKEGEKHDQTVAVNSSGDSQIGTVGCVAVDNEG NLASATSTGGLVNKMVGRIGDTPVIGAGTYANSYCAVSATGQGEFVIRATAAREVAALMEYKGLSLKEAAAYVVDKCAPKGTVGLIAVSATGEVTMPFNT TGMFRACATEEGYSEIGIWHDEQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034655 [exp]	0	1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10005952 [exp]	2.2	0.8475
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Lus10020053 [exp]	5.1	0.8245
AT5G11090			serine-rich protein-related (....		Lus10001928 [exp]	6.5	0.7877
AT5G65380			MATE efflux family protein (.1...		Lus10015903 [exp]	7.7	0.7975
AT2G34980		SETH1	phosphatidylinositolglycan syn...		Lus10024198 [exp]	8.9	0.7625
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10015464 [exp]	12.0	0.7785
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10033120 [exp]	16.0	0.7160
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Lus10029454 [exp]	19.0	0.8107
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10021492 [exp]	19.1	0.7398
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	19.4	0.7649

Compare expression of checked genes

Lus10034655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.