Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27570 77 / 4e-17 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 77 / 6e-17 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT5G43690 76 / 1e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18590 76 / 2e-16 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT1G74090 75 / 4e-16 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT3G45080 74 / 1e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74100 73 / 2e-15 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT3G45070 71 / 1e-14 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 69 / 5e-14 SOT7 sulphotransferase 7 (.1) AT2G14920 69 / 6e-14 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017878 [exp] 195 / 7e-62 AT1G18590 289 / 3e-96 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10008673 [exp] 65 / 1e-12 AT5G07010 429 / 3e-151 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10026147 [exp] 65 / 2e-12 AT5G07010 425 / 2e-149 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Lus10041611 [exp] 64 / 5e-12 AT3G45070 239 / 9e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018047 [exp] 64 / 6e-12 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 56 / 2e-09 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003070 [exp] 53 / 2e-08 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003068 [exp] 51 / 3e-08 AT3G45070 63 / 1e-20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031623 [exp] 52 / 5e-08 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048712 [exp] 86 / 6e-20 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 85 / 1e-19 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 83 / 4e-19 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.012G032700 [exp] 83 / 5e-19 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048500 [exp] 82 / 8e-19 AT1G74100 164 / 2e-48 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048700 [exp] 79 / 3e-18 AT3G45080 132 / 6e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G048100 [exp] 79 / 1e-17 AT1G74100 251 / 1e-81 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.011G048300 [exp] 77 / 1e-16 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048400 [exp] 74 / 7e-16 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.003G193250 [exp] 74 / 1e-15 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10034656 pacid=23162836 polypeptide=Lus10034656 locus=Lus10034656.g ID=Lus10034656.BGIv1.0 annot-version=v1.0 ATGCTGAAAGCAGAGGAAGACAACCCTGCCGTCACCGCCACCGCCACCACTTATGAGGACAACAACTCAATAAAGAAACTGATCTCAACACTGCCCACAA CATCAGATGGCAACTCCAATACCAACCTGTACCAGTACCAAGGCTTCTGGTACCACTCCTACTACCTACAGCTCTTAATCTCAGCTCAAACCAACTTCAC CCCAAAACCCAATACCACCATCCTCTGCAGTTACCCTAAAACCGGAACCACTTGGTTAAAGGCTCTCTCTTTCGCCATTTCCAACCGAACCCACCAAAAC CCTAATTTTCAATCCCGTCTCCTCACAGTCCTCCCCCATGACTACTTTGAGAATTTGAAGGGGTTGGAAGTGAGTAAAGAGGGGTGTTATCTTGTGGATA CTCATTTTGCTGTGCCTAACAGTTCGTTTTATAAAAAGGGACAAGTGGGGGATTGGAGGAATTGTATTGGTGATGAGATGGGAGCTCGTCTGGATCGGAT TGTGGAGGATAAGCTTAGTGCCTATGGATTCAGATTATGGTCTTCTCCACAAACAACTTGA
AA sequence Show only first row Show all	>Lus10034656 pacid=23162836 polypeptide=Lus10034656 locus=Lus10034656.g ID=Lus10034656.BGIv1.0 annot-version=v1.0 MLKAEEDNPAVTATATTYEDNNSIKKLISTLPTTSDGNSNTNLYQYQGFWYHSYYLQLLISAQTNFTPKPNTTILCSYPKTGTTWLKALSFAISNRTHQN PNFQSRLLTVLPHDYFENLKGLEVSKEGCYLVDTHFAVPNSSFYKKGQVGDWRNCIGDEMGARLDRIVEDKLSAYGFRLWSSPQTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74090		SOT18, ATSOT18,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10034656 [exp]	0	1
					Lus10034961 [exp]	7.3	0.7440
					Lus10011661 [exp]	13.6	0.7417
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	20.2	0.6895
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	20.2	0.7049
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	20.2	0.7058
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	22.3	0.6965
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015888 [exp]	27.4	0.7033
					Lus10013473 [exp]	29.1	0.6615
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Lus10034863 [exp]	30.4	0.6256
					Lus10009357 [exp]	43.5	0.6704

Compare expression of checked genes

Lus10034656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.