Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31670 264 / 2e-89 Stress responsive alpha-beta barrel domain protein (.1) AT1G51360 196 / 2e-63 ATDABB1 dimeric A/B barrel domainS-protein 1 (.1) AT3G17210 45 / 3e-06 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) AT2G32500 47 / 4e-06 Stress responsive alpha-beta barrel domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017873 [exp] 433 / 8e-157 AT2G31670 258 / 4e-87 Stress responsive alpha-beta barrel domain protein (.1) Lus10037823 [exp] 39 / 0.0008 AT3G17210 170 / 1e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125701 [exp] 298 / 9e-103 AT2G31670 257 / 6e-86 Stress responsive alpha-beta barrel domain protein (.1) Potri.001G413500 [exp] 286 / 7e-98 AT2G31670 241 / 2e-79 Stress responsive alpha-beta barrel domain protein (.1) Potri.010G037500 [exp] 45 / 4e-06 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.014G154900 [exp] 45 / 1e-05 AT2G32500 314 / 5e-108 Stress responsive alpha-beta barrel domain protein (.1) Potri.010G037200 [exp] 41 / 0.0002 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151000 [exp] 39 / 0.0005 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [flax] [poplar] Dim_A_B_barrel PF07876 [flax] [poplar] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Lus10034659 pacid=23162875 polypeptide=Lus10034659 locus=Lus10034659.g ID=Lus10034659.BGIv1.0 annot-version=v1.0 ATGTCGACCGCTTCTTCCGAAACAGTGGAGCACATCGTCCTCTTCAAAGTCAAAGACAGCGTCGAACCTTCCAGAATCCAATCCATGCTGAGCTCCCTCA ACGCCCTCGTCTCTCTCGATTCGGTCCTCCATCTCTCCGCCGGACCAATCCACCGTGTCAAATCCTCACCCATCCCGTTCACGCATCTCCTCCACAGCCG CTACTCCTCAAAGGAAAACCTAAAGTCCTACGCTCTCCATCCCAGCCACGTCACAGCCGTCAAGGAGTGCGTCCTTCCGGTTTGTGACGATGTCATGGCT GTCGATTGGATAGCCCGGGACCTCCGAGGACCGGTGGCTCCGCCGCCGGGGTCTGGAATTAGGCTGACGTTTCTGAAATTGAAGGAGAATTTGGGGGAAG AGGCCAAGGGTGAGATAATCGAGGTGATTGGAGGGGTGAAGGATAAGCTGGGGGAGATGGAACAGCTAACAGTGGGTGAGAATTTCTCGCCGGAGAGAGC TAAAGGTTATTCTATTGCTTCTCTGGCTTTATTCGGTGGGCGGAGTGAGTTGGACTTAGTGGATACAAAGGGAGAGCTGGTGAACTCGGAGAAGGATAAA GTTAGGAAGCATCTTGAGAGCGTTATTGTGCTTGATTATGTGGTACCGTCTTCACAGTCTACGGCTAGTCTCTAA
AA sequence Show only first row Show all	>Lus10034659 pacid=23162875 polypeptide=Lus10034659 locus=Lus10034659.g ID=Lus10034659.BGIv1.0 annot-version=v1.0 MSTASSETVEHIVLFKVKDSVEPSRIQSMLSSLNALVSLDSVLHLSAGPIHRVKSSPIPFTHLLHSRYSSKENLKSYALHPSHVTAVKECVLPVCDDVMA VDWIARDLRGPVAPPPGSGIRLTFLKLKENLGEEAKGEIIEVIGGVKDKLGEMEQLTVGENFSPERAKGYSIASLALFGGRSELDLVDTKGELVNSEKDK VRKHLESVIVLDYVVPSSQSTASL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31670			Stress responsive alpha-beta b...		Lus10034659 [exp]	0	1
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10025589 [exp]	1.4	0.9002
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10041105 [exp]	6.2	0.8912
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	8.1	0.8676
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	12.4	0.8923
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10031983 [exp]	13.2	0.8803
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	17.0	0.8831
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10002533 [exp]	17.9	0.8746
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	25.6	0.8813
AT5G11280			unknown protein		Lus10002030 [exp]	27.4	0.8758
					Lus10036954 [exp]	28.1	0.8220

Compare expression of checked genes

Lus10034659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.