Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29680 545 / 0 Alkaline-phosphatase-like family protein (.1) AT4G29690 496 / 6e-174 Alkaline-phosphatase-like family protein (.1) AT4G29700 489 / 6e-171 Alkaline-phosphatase-like family protein (.1) AT4G29710 158 / 1e-46 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007981 [exp] 619 / 0 AT4G29680 526 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10008562 [exp] 576 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10032681 [exp] 574 / 0 AT4G29680 699 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10017872 [exp] 342 / 3e-117 AT4G29680 243 / 6e-79 Alkaline-phosphatase-like family protein (.1) Lus10000041 [exp] 288 / 7e-97 AT4G29700 204 / 2e-64 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150900 [exp] 568 / 0 AT4G29680 703 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.018G066600 [exp] 565 / 0 AT4G29680 678 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF01663 [flax] [poplar] Phosphodiest Type I phosphodiesterase / nucleotide pyrophosphatase
Representative CDS sequence Show only first row Show all	>Lus10034660 pacid=23162858 polypeptide=Lus10034660 locus=Lus10034660.g ID=Lus10034660.BGIv1.0 annot-version=v1.0 ATGGCTAAACCCCAAAGTACTCCAAACCAAACCACTTCCCTTCTATCCGACGAATCAGACTACAATGCCTCCCCTAATCAGAAAACCCACCCAGGCTCCA ACCCGCTCATCTTCGCAACTCTCATCGCTCTCAGCTGCGTTGGCCTTGCAGCGTCGTCCGCTTTCGGATACCTCTACTTCACCACTACTACCTCTTCCTC TTCCAAACCCCAAGAGATTTCATCTCACCAACGAACCGCACGCCCTTCCCCGAAACTCCCCCATCCTGTCGTGATCATGATCTCATCAGACGGGTTCAGG TTCGGGTACCAATTCAAGACCCCAACCCCAAACATCGACCGGTTAATTGCGGAAGGAACCTCTGCTGACCGGGGTTTGATTCCAGTCTACCCGACTCTTA CTTTCCCCAACCACTATTCAATGGTGACGGGGCTTTACCCGCCTTACCACGGCATTATCAACAACTACTTTGTGGAACCATCCACGGGCGACGAGTTCAC CGTTAGGAGCCACGACCCGAAGTTCTGGCTTGGCGAGCCGTTATGGGAGACCGTGACTAACCACGGTCTGCCGGCTGCGGCTTATTATTGGGCTGGAGCC GAAGTGTTGAAAGGCGAGTGGACTTGTCCGCCTCAGTTCTGTCCAAAGTACAATGTCTCTTTTCCTCTGGAGGAAAGGATTGATGCTCTGCTTCGTAACT TTGACCTGCCGAAGGGTGAAATTCCTGTTCTCATGAATTTGTATCTTGAAGAACCTGATGCACAGGGTCACCAGGTGGGACCGGATGATCCCCGAGTAAC GGCGGCCGTGGCCAGAGTGGACGCGCTACTAGGAAGACTAATCAACGGCCTCGAATCGAGACAACTCCTAGACGAAGTTACAATAATCTTCGTCGGCGAC CACGGCATGGTCGGCACGTGCGACAAAAAGTACATATACATCGAGGACCTATCCGGTTACATAACCATTCCCGAATCCTGGATCATGTACCACACTCCGG TACTTTCAATTCGACCTCCGGCGGGGGTCGACGTTGCCGACGTGGTGGCTAAGATGAACAAGGCGTTGGAGTCAGGGAACGTGACCAACGGCGGGAATCT GAAAGTATACCTGAAGGAGAATCTTCCGGCGAGGCTGCATTACTGGGAGAGCGACAGGATCCCGCCGATAATCGGGATCGTTGCGGAGGGCTACACGGTG GAGCAGCGGCGGACGGCGGGAGAGGAGATGTGCTGGGGATCGCACGGATATGATAATGCTCTGTTTTCGATGAGGTCGATATTTGTTGGGCGTGGGCCAA GGTTTGGGAAGGGAATTACTGTGCCGTCGTTTGAGAATGTGGAGATTTATAATGTGGTTACTGAGATTTTGGGGGTGGTCGGAGCTCCGAACAATGGGTC TTTGGGTTTTGCTAACTCTGTTTTGTTGAGTTGA
AA sequence Show only first row Show all	>Lus10034660 pacid=23162858 polypeptide=Lus10034660 locus=Lus10034660.g ID=Lus10034660.BGIv1.0 annot-version=v1.0 MAKPQSTPNQTTSLLSDESDYNASPNQKTHPGSNPLIFATLIALSCVGLAASSAFGYLYFTTTTSSSSKPQEISSHQRTARPSPKLPHPVVIMISSDGFR FGYQFKTPTPNIDRLIAEGTSADRGLIPVYPTLTFPNHYSMVTGLYPPYHGIINNYFVEPSTGDEFTVRSHDPKFWLGEPLWETVTNHGLPAAAYYWAGA EVLKGEWTCPPQFCPKYNVSFPLEERIDALLRNFDLPKGEIPVLMNLYLEEPDAQGHQVGPDDPRVTAAVARVDALLGRLINGLESRQLLDEVTIIFVGD HGMVGTCDKKYIYIEDLSGYITIPESWIMYHTPVLSIRPPAGVDVADVVAKMNKALESGNVTNGGNLKVYLKENLPARLHYWESDRIPPIIGIVAEGYTV EQRRTAGEEMCWGSHGYDNALFSMRSIFVGRGPRFGKGITVPSFENVEIYNVVTEILGVVGAPNNGSLGFANSVLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	0	1
AT4G29700			Alkaline-phosphatase-like fami...		Lus10000041 [exp]	1.0	0.9887
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	4.6	0.9628
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	4.9	0.9627
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10010870 [exp]	5.5	0.9548
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	6.6	0.9561
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10037205 [exp]	8.1	0.9711
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10042557 [exp]	9.1	0.9405
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10033582 [exp]	12.6	0.9382
AT1G22430			GroES-like zinc-binding dehydr...		Lus10005656 [exp]	13.1	0.9374
					Lus10031841 [exp]	14.3	0.9605

Compare expression of checked genes

Lus10034660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.