Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17390 139 / 4e-40 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G03290 128 / 3e-36 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G03720 125 / 3e-36 MRH6 morphogenesis of root hair 6, Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G69080 119 / 4e-33 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT1G44760 84 / 8e-20 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT4G13450 59 / 2e-10 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007982 [exp] 167 / 4e-51 AT5G17390 149 / 1e-43 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10019173 [exp] 155 / 5e-47 AT1G69080 192 / 2e-61 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10036814 [exp] 111 / 1e-31 AT1G69080 109 / 7e-32 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10042701 [exp] 75 / 2e-16 AT1G44760 235 / 6e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029664 [exp] 73 / 1e-15 AT1G44760 236 / 2e-79 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10025644 [exp] 68 / 6e-14 AT1G44760 211 / 1e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10018190 [exp] 65 / 6e-13 AT1G44760 197 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10014459 [exp] 64 / 4e-12 AT4G13450 195 / 8e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10023716 [exp] 62 / 4e-12 AT4G13450 136 / 2e-41 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060700 [exp] 179 / 1e-56 AT3G03290 198 / 2e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G140200 [exp] 154 / 1e-46 AT1G69080 202 / 3e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.T170801 [exp] 150 / 4e-45 AT1G69080 196 / 3e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.008G109000 [exp] 150 / 4e-45 AT1G69080 196 / 6e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Potri.005G177100 [exp] 84 / 1e-19 AT1G44760 226 / 3e-75 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G084600 [exp] 75 / 3e-16 AT1G44760 200 / 5e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G064800 [exp] 70 / 1e-14 AT4G13450 194 / 4e-63 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10034661 pacid=23162730 polypeptide=Lus10034661 locus=Lus10034661.g ID=Lus10034661.BGIv1.0 annot-version=v1.0 ATGTGCAGCGGCGTCGGTGCCCGGTCAATGACCCGGATCCGGGTTCGGTCTCCGTCGGTGGTTCGCCGTTCACCCAAACCCAACAACACCTCCGGCTACA GACGAAGCAGTTCCGAGGACAGCATTGATTTCGATGATGGGTTTGGGAGTATGAATAAGAAGATGAGCAATAATAATAAGGTGATGGTGGTGGTGGATTC AGGGGCGGAAGCTAAGGCTGCTCTGGAACTGGCACTTTCCCACACTGTTCAAACTCACGACTCCATCCTTCTCCTCTATGTCGCAAATCAACCATCTAGT ACTACTCCTCCTAGTGAAGGTTATGAGCTTCTCTGCTCTTTGAAGAACTTGTGCCAGAGGAAAAGGCCAGGGGTGAATGTGGAGTTGATAATAAGGGAGG GGAAGAACAGGGGAGGCGTGATAGTGGAAGAGGCGAAGAAAGAGAGGGTTTCCTTGGTGGTGATGGGGCAGAGGAAGCGGTGGGTGATGTGGCGGCTGAT TCAGAGGTTGAAGAGCAGGAAGATCCACGGCGGCGGCGGAGAAAATGAGGCGGTGGTTAAGTATTGCATACAGAATTCAGGGTGCTTGACGATTGCGGTG AGGAGGCAGGGCAAGAAGCTGGGTGGGTATTTGATTACTACAAAGCGTCACAAGAACTTCTGGCTGTTGGCTTAA
AA sequence Show only first row Show all	>Lus10034661 pacid=23162730 polypeptide=Lus10034661 locus=Lus10034661.g ID=Lus10034661.BGIv1.0 annot-version=v1.0 MCSGVGARSMTRIRVRSPSVVRRSPKPNNTSGYRRSSSEDSIDFDDGFGSMNKKMSNNNKVMVVVDSGAEAKAALELALSHTVQTHDSILLLYVANQPSS TTPPSEGYELLCSLKNLCQRKRPGVNVELIIREGKNRGGVIVEEAKKERVSLVVMGQRKRWVMWRLIQRLKSRKIHGGGGENEAVVKYCIQNSGCLTIAV RRQGKKLGGYLITTKRHKNFWLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	0	1
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	1.4	0.9781
					Lus10041251 [exp]	3.5	0.9703
AT3G45230			hydroxyproline-rich glycoprote...		Lus10041306 [exp]	4.0	0.9532
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	5.7	0.9466
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	6.0	0.9629
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	6.0	0.9644
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	6.5	0.9574
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	6.9	0.9611
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	7.7	0.9448
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	8.4	0.9612

Compare expression of checked genes

Lus10034661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.