Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15650 416 / 7e-148 REVERSIBLYGLYCOSYLATEDPOLYPEPTIDE2, RGP2, ATRGP2 reversibly glycosylated polypeptide 2 (.1) AT3G02230 412 / 3e-146 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) AT3G08900 407 / 2e-144 RGP3 reversibly glycosylated polypeptide 3 (.1) AT5G50750 367 / 1e-128 RGP4 reversibly glycosylated polypeptide 4 (.1) AT5G16510 240 / 6e-79 RGP5 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017868 [exp] 446 / 1e-159 AT5G15650 648 / 0.0 reversibly glycosylated polypeptide 2 (.1) Lus10000646 [exp] 417 / 2e-148 AT3G08900 662 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10026676 [exp] 417 / 3e-148 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10004640 [exp] 416 / 5e-148 AT3G08900 654 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10005076 [exp] 412 / 2e-146 AT3G02230 662 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10036970 [exp] 405 / 1e-143 AT3G08900 645 / 0.0 reversibly glycosylated polypeptide 3 (.1) Lus10022443 [exp] 394 / 2e-139 AT3G02230 642 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10034376 [exp] 366 / 1e-128 AT3G02230 608 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Lus10016749 [exp] 324 / 1e-111 AT3G02230 570 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060300 [exp] 418 / 6e-149 AT3G08900 650 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.017G099100 [exp] 413 / 1e-146 AT5G15650 671 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.008G097600 [exp] 412 / 3e-146 AT3G08900 669 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.010G156700 [exp] 411 / 4e-146 AT3G08900 658 / 0.0 reversibly glycosylated polypeptide 3 (.1) Potri.004G117800 [exp] 409 / 5e-145 AT5G15650 663 / 0.0 reversibly glycosylated polypeptide 2 (.1) Potri.012G101100 [exp] 387 / 9e-137 AT3G02230 610 / 0.0 ARABIDOPSIS THALIANA REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1, reversibly glycosylated polypeptide 1 (.1) Potri.019G051700 [exp] 246 / 4e-81 AT5G16510 493 / 1e-176 reversibly glycosylated protein 5, reversibly glycosylated polypeptide 5, Alpha-1,4-glucan-protein synthase family protein (.1.2) Potri.015G099400 [exp] 51 / 1e-07 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03214 [flax] [poplar] RGP Reversibly glycosylated polypeptide
Representative CDS sequence Show only first row Show all	>Lus10034665 pacid=23162816 polypeptide=Lus10034665 locus=Lus10034665.g ID=Lus10034665.BGIv1.0 annot-version=v1.0 ATGGCGGAATTCTACGCTGTCTCCCCGACCCCTCTGCTCAAAGACGAGCTGGACATCGTCATCCCGACCATCAGGAACCTCGATTTCCTCGAGATGTGGA GGCCCTTCTTCCAGCCTTACCACCTCATCATCGTCCAGGACGGCGATCCTTCCAAGGTCATCAAAGTCCCCGAAGGCTTTGACTACGAGCTCTACAACAG GAACGACATCAACCGCATTCTGGGTCCCAAGGCCTCTTGCATCTCCTTCAAGGACTCTGCATGCCGCTGCTTCGGCTACTTGGTCTCCAAGAAGAAGTAC GTCTACACCATCGACGATGACTGCTTCGTAGCTAATGAACCATCTGGGAAGAAGATCAATGCACTTGAGCAGCACATCAAGAACTTACTCTGCCCATCAA CACCATTCTTCTACAACACATTGTACGATCCATACCGTGAAGGTGCTGATTTCGTCCGTGGTTACCCCTTTAGCCTTCGCGAAGGGGTCCCCACTGCAGT GTCTCATGGCCTCTGGCTCAACATTCCTGACTACGATGCTCCAACCCAGCTAGTCAAGCCACTCGAGAGGAACACTAGATATGTGGATGCTGTAATGACA ATTCCCAAGGGAACCCTTTACCCAATGTGTGGGATGAACCTTGCATTCAACCGTGACTGA
AA sequence Show only first row Show all	>Lus10034665 pacid=23162816 polypeptide=Lus10034665 locus=Lus10034665.g ID=Lus10034665.BGIv1.0 annot-version=v1.0 MAEFYAVSPTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYLVSKKKY VYTIDDDCFVANEPSGKKINALEQHIKNLLCPSTPFFYNTLYDPYREGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMT IPKGTLYPMCGMNLAFNRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034665 [exp]	0	1
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10017868 [exp]	1.0	0.9276
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10034664 [exp]	1.4	0.9109
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	2.4	0.8610
AT1G70280			NHL domain-containing protein ...		Lus10012989 [exp]	3.5	0.8467
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10043391 [exp]	7.7	0.8066
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	8.4	0.8393
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10034312 [exp]	12.3	0.7737
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	13.4	0.8126
AT5G05340			Peroxidase superfamily protein...		Lus10029065 [exp]	17.7	0.8040
AT5G56350			Pyruvate kinase family protein...		Lus10010329 [exp]	18.0	0.8332

Compare expression of checked genes

Lus10034665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.