Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20910 373 / 2e-130 AIP2 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) AT5G15820 100 / 9e-24 RING/U-box superfamily protein (.1) AT3G02340 95 / 9e-22 RING/U-box superfamily protein (.1) AT3G19950 91 / 8e-21 RING/U-box superfamily protein (.1) AT2G39720 86 / 1e-18 RHC2A RING-H2 finger C2A (.1) AT5G01980 82 / 2e-17 RING/U-box superfamily protein (.1) AT5G59550 82 / 2e-17 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 81 / 2e-17 RING/U-box superfamily protein (.1.2.3) AT5G08139 81 / 4e-17 RING/U-box superfamily protein (.1) AT1G26800 78 / 5e-17 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017865 [exp] 563 / 0 AT5G20910 389 / 2e-136 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Lus10010179 [exp] 87 / 7e-20 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10024372 [exp] 89 / 8e-20 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 86 / 2e-19 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023235 [exp] 86 / 1e-18 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10008874 [exp] 86 / 2e-18 AT5G08139 198 / 3e-59 RING/U-box superfamily protein (.1) Lus10002637 [exp] 85 / 2e-18 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10031422 [exp] 83 / 4e-18 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10020258 [exp] 84 / 1e-17 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G217600 [exp] 400 / 5e-141 AT5G20910 360 / 2e-125 ABI3-interacting protein 2, RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 97 / 8e-23 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 95 / 5e-22 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 94 / 6e-22 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 91 / 5e-21 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.015G047900 [exp] 91 / 4e-20 AT5G08139 201 / 3e-60 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 87 / 3e-19 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.001G243300 [exp] 87 / 3e-19 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G065300 [exp] 87 / 5e-19 AT5G08139 178 / 4e-51 RING/U-box superfamily protein (.1) Potri.009G034800 [exp] 84 / 2e-18 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10034667 pacid=23162854 polypeptide=Lus10034667 locus=Lus10034667.g ID=Lus10034667.BGIv1.0 annot-version=v1.0 ATGGATCATTCCGAAGCCGAATTGAAGCAGCAGCTGGAGGAATTGGAGAGGCAGCTTAACAAGAAGCAGCGCTTCGAGGACGCCGTTTCTTCCATCAAAT CTCTCCTCCGCGATCGCTATCCCTCCGCTTCCCTCCCTCTTCGCAAATTGTTCTATTCCGTGGTATGCCGAGTTGCCACTGTTCTGAAGACTAGGCACAC AGCCCCTGGCTTCTGGTTCGCCGGCTTAGGGCTATTCGAGCTCGCCGAATCCCTTGCTTCCGACCCGTCACAGAAGTCCCACTTGCGGAGTTGCGTCTCC CAGGCGAAAGAACTTTTGAATCAAGTTGACACTCCACCAGCGCTCTCCTCAAACACAGGAGGTTATCTTTTTGAAGGGCATCTCACGGTTGATACTGAGC CGGCACAACCTCAATGGCTTATGCAACAGAACCTCATGAGCTCTATGGCTTCTATTATGGAAGCCCAGTCCTCTGGAGGCGCTGTTGACGATAACAACCC TGCCAGAGATTCAGCAGCTTCTACGCTACTTGAACAACTCATTACTAATCTTAACGACGTTATACCGGAGATTATGGATGACGGGTCCAGAGTTCCGAGA GTCCCTCCTGCAAGTAAAGAGGTAGTTGCAAAGCTTCCGGTTGTTACCCTCACTCAGGATATATTGGCCAAGCTCGGATCAGATGCGGAGTGTGCAATTT GTAAGGAGAATTTGGTTGTTGATGACAAGATGCAAGAGTTGCCTTGCAAGCATACGTTCCATCCTCCCTGTTTGAAGCCGTGGCTGGATGAGCACAATTC TTGCCCAATTTGCCGCCATGAACTGCAGACTGATGATCATGCATATGAGAGCTGGAAAGAACGGGAGAGGGAGGCGGAAGAAGAGAGAAAAGGAGCTGCA AATGCTGTACGTGGTGGTGAATACATGTATGTTTGA
AA sequence Show only first row Show all	>Lus10034667 pacid=23162854 polypeptide=Lus10034667 locus=Lus10034667.g ID=Lus10034667.BGIv1.0 annot-version=v1.0 MDHSEAELKQQLEELERQLNKKQRFEDAVSSIKSLLRDRYPSASLPLRKLFYSVVCRVATVLKTRHTAPGFWFAGLGLFELAESLASDPSQKSHLRSCVS QAKELLNQVDTPPALSSNTGGYLFEGHLTVDTEPAQPQWLMQQNLMSSMASIMEAQSSGGAVDDNNPARDSAASTLLEQLITNLNDVIPEIMDDGSRVPR VPPASKEVVAKLPVVTLTQDILAKLGSDAECAICKENLVVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELQTDDHAYESWKEREREAEEERKGAA NAVRGGEYMYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	0	1
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	2.8	0.8903
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	3.9	0.8829
AT1G15530			Concanavalin A-like lectin pro...		Lus10014037 [exp]	5.8	0.8394
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10042857 [exp]	5.9	0.9051
AT1G79160			unknown protein		Lus10031179 [exp]	6.2	0.8480
AT4G26180			Mitochondrial substrate carrie...		Lus10008572 [exp]	9.2	0.8156
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	12.8	0.8502
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	14.8	0.8529
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	15.3	0.8510
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	15.7	0.8578

Compare expression of checked genes

Lus10034667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.