Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08100 468 / 3e-167 ASPGA1 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT3G16150 332 / 9e-114 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) AT4G00590 82 / 2e-17 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT5G61540 80 / 1e-16 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034655 [exp] 605 / 0 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 317 / 2e-107 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10017879 [exp] 166 / 1e-50 AT5G08100 157 / 4e-48 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009826 [exp] 85 / 4e-18 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10040935 [exp] 82 / 3e-17 AT4G00590 484 / 8e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10009560 [exp] 82 / 3e-17 AT5G61540 518 / 0.0 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10020385 [exp] 77 / 2e-15 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G063400 [exp] 495 / 4e-178 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.002G122900 [exp] 335 / 8e-115 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.014G022900 [exp] 332 / 2e-113 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.014G080600 [exp] 81 / 1e-16 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G191900 [exp] 73 / 3e-14 AT5G61540 497 / 2e-177 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Lus10034668 pacid=23162720 polypeptide=Lus10034668 locus=Lus10034668.g ID=Lus10034668.BGIv1.0 annot-version=v1.0 ATGGGTTGGGCAATCGCTCTTCACGGCGGCGGCGGCGACATACCACGCTCTCTTATGCCCGATGGCCGCCTCCCCCGTGAAGCCGCTCTCCGCCACTGCC TCCAGCTTGGTGTCTCCGCTCTTCAGTCCCACTCCCACCCTCTTGCCGTCGTTGAGCTCGTGGTTCGTGAATTGGAGAACCACCCACAGTTCAATGCTGG TAAGGGATCTGTACTAACCACTGCTGGGACAGTGGAGATGGAAGCTAGCATCATGGATGGCAAAACAAAGAACTGTGGAGCAGTTTCTGGACTTACCACT GTTGTCAATGCTATCTCGCTTGCACGCCTCGTCATGGATAAGACTCCTCACATCTATCTGGGGTTCCAAGGAGCTGAAGCTTTTGCAAGGGAACAAGGTG TAGAGACAGTTGATCCAAGTTATTTTATTACTCCCGAAAATATCGAGAGGCTGAAGCAGGCCAAAGAAGCCAACAGAGTTCAGATTGACTACACACAACC AATCAAGAAAGGCGAGAAGCATGACCAAACTGTGGCAGTCGACAGTAGCGGGGACAGCCAAATCGGAACAGTTGGATGTGTGGCTGTTGACGGGGAAGGG AACTTAGCAGCTGCAACTTCTACAGGCGGACTAGTTAATAAGATGGTGGGGAGGATCGGTGACTCACCTCTGATCGGTGCAGGGACATACGCCAATAGTT ACTGTGCAGTTTCGGCAACGGGGCAAGGGGAATTTGTCATACGTGCTACTGCTGCTAGAGATGTTGCTGCTCTTATGGAGTACAAAGGCCTGTCTCTCAA GGAAGCAGCTGCTTATGTGGTTGATGAGTGTGCTCCTAAGGGGACTTTTGGATTGATCGCTGTGTCTGCTACGGGGGAAGTCACAATGCCGTTCAACATG ACTGGGATGTTTCGAGCATGTGCTACCGAAGAAGGGTACTCCGAAATCGGGATATGGCATGAGGAGCAAGAATGA
AA sequence Show only first row Show all	>Lus10034668 pacid=23162720 polypeptide=Lus10034668 locus=Lus10034668.g ID=Lus10034668.BGIv1.0 annot-version=v1.0 MGWAIALHGGGGDIPRSLMPDGRLPREAALRHCLQLGVSALQSHSHPLAVVELVVRELENHPQFNAGKGSVLTTAGTVEMEASIMDGKTKNCGAVSGLTT VVNAISLARLVMDKTPHIYLGFQGAEAFAREQGVETVDPSYFITPENIERLKQAKEANRVQIDYTQPIKKGEKHDQTVAVDSSGDSQIGTVGCVAVDGEG NLAAATSTGGLVNKMVGRIGDSPLIGAGTYANSYCAVSATGQGEFVIRATAARDVAALMEYKGLSLKEAAAYVVDECAPKGTFGLIAVSATGEVTMPFNM TGMFRACATEEGYSEIGIWHEEQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10034668 [exp]	0	1
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10034547 [exp]	2.2	0.9402
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10018986 [exp]	4.5	0.9297
AT5G25140		CYP71B13	"cytochrome P450, family 71, s...		Lus10018263 [exp]	8.8	0.9344
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Lus10038592 [exp]	9.3	0.9104
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	9.5	0.9220
AT1G50650			Stigma-specific Stig1 family p...		Lus10006512 [exp]	9.6	0.9085
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	11.7	0.9380
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10013676 [exp]	12.7	0.8903
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	12.8	0.9224
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10016139 [exp]	14.1	0.9251

Compare expression of checked genes

Lus10034668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.