Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47420 521 / 0 DIM1A adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) AT5G66360 283 / 3e-93 DIM1B adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) AT1G01860 96 / 2e-22 PFC1 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017864 [exp] 662 / 0 AT2G47420 529 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10041797 [exp] 253 / 2e-81 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Lus10009319 [exp] 98 / 5e-22 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015847 [exp] 56 / 5e-09 AT1G01860 216 / 6e-70 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121200 [exp] 570 / 0 AT2G47420 526 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Potri.018G018900 [exp] 258 / 2e-83 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.014G077100 [exp] 103 / 4e-25 AT1G01860 437 / 1e-154 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Potri.006G264101 [exp] 79 / 6e-18 AT5G66360 120 / 1e-33 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00398 [flax] [poplar] RrnaAD Ribosomal RNA adenine dimethylase
Representative CDS sequence Show only first row Show all	>Lus10034669 pacid=23162773 polypeptide=Lus10034669 locus=Lus10034669.g ID=Lus10034669.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGCAAGATACGGAAGGAGAAGCCGAAGGCGACGTCAACGAATCACTACCAAGGCGGCATATCGTTTCACAAATCCAAAGGCCAGCATATCC TCAAGAACCCTATGCTTGTCGATACCATAGTCCAGAAATCCGGCATCAAGAGCACCGATGTCATTCTCGAAATCGGTCCCGGTACTGGAAATCTCACCAA GAAGCTCCTCGAAGCCGGAAAGTCTGTCACCGCAATCGAGCTCGATTCTCGCATGGTCCTCGAGCTTACCCGCCGCTTCCAGGGCACTCCCTTTGCCACC AAGTTGAAGGTCATTCAAGGCGATGTGCTGAAAACCGATCTTCCCTATTTCGATATATGCGTGGCCAACATCCCTTACCAAATATCGTCTCCCCTAACAT TCAAGCTACTCAACCATCAGCCTTCCTTCAGGTGTGCAGTTATAATGTACCAGAGGGAGTTTGCAATGAGACTTGTTGCTCAGCCAGGTGACAACTTGTA CTGCCGTCTCTCTGTCAATACACAACTGTACGCGAGGGTCTCCCATCTTCTCAAAGTCGGGAAGAACAATTTCCGGCCTCCACCTAAGGTCGATTCCTCC GTGGTTCGAATTGAGCCCCGGAAGCCATGCCCCCAAGTTAACCCTAAGGAATGGGACGGATTCATACGAATTTGTTTCATCCGCAAGAACAAAACTCTTG GTGCAATATTTAGAATAAAGAATGTTCTTGCCTTGCTGGAGAAGAACTACAAAACCCTCCAGGCACTACGTCCATCGGAGAACACAGATGGTGAGATGGA TATCTCTGGACTGGGGGATACCGGAGCTGACCAGAGCATGGACATGGACGATGACTCCGACGATGAAATGGAGATGGAGGATAAGGAAGCAGTGGACGAG AAGTCGGAGTTCAAAGAAAAGGTTATTGCTGTGCTGGAGGAGCATAAGTTTCTTGATCGGAGGTCATCTAAGTTGTCGCAAGAAGAGTTCTTGTTTCTGC TCTCTCGATTCAACATGGCTGGCATCCACTTCTCCTGA
AA sequence Show only first row Show all	>Lus10034669 pacid=23162773 polypeptide=Lus10034669 locus=Lus10034669.g ID=Lus10034669.BGIv1.0 annot-version=v1.0 MAGGKIRKEKPKATSTNHYQGGISFHKSKGQHILKNPMLVDTIVQKSGIKSTDVILEIGPGTGNLTKKLLEAGKSVTAIELDSRMVLELTRRFQGTPFAT KLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLNHQPSFRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLLKVGKNNFRPPPKVDSS VVRIEPRKPCPQVNPKEWDGFIRICFIRKNKTLGAIFRIKNVLALLEKNYKTLQALRPSENTDGEMDISGLGDTGADQSMDMDDDSDDEMEMEDKEAVDE KSEFKEKVIAVLEEHKFLDRRSSKLSQEEFLFLLSRFNMAGIHFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47420		DIM1A	adenosine dimethyl transferase...		Lus10034669 [exp]	0	1
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Lus10039847 [exp]	5.9	0.8812
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10043379 [exp]	6.9	0.8695
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	20.9	0.8696
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	28.3	0.8779
					Lus10018952 [exp]	31.8	0.8288
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	39.0	0.8652
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	50.3	0.8566
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012070 [exp]	51.2	0.8386
AT1G29370			Kinase-related protein of unkn...		Lus10004604 [exp]	73.0	0.8348
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10030063 [exp]	75.8	0.8484

Compare expression of checked genes

Lus10034669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.