Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 713 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 608 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 598 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 586 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT1G09790 427 / 2e-147 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 215 / 8e-68 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 142 / 2e-36 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 137 / 6e-35 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 123 / 4e-30 COBL10 COBRA-like protein 10 precursor (.1) AT3G16860 122 / 1e-29 COBL8 COBRA-like protein 8 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017863 [exp] 928 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 682 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 680 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 636 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 633 / 0 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 614 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 607 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10007986 [exp] 607 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 582 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060100 [exp] 778 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 676 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 652 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060000 [exp] 607 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 595 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.012G062200 [exp] 592 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 540 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 525 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 459 / 4e-160 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 379 / 3e-128 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10034670 pacid=23162823 polypeptide=Lus10034670 locus=Lus10034670.g ID=Lus10034670.BGIv1.0 annot-version=v1.0 ATGGATGATGAGGTACAACAGAGTTGCCAATGGCAGAAACCAACATTATCAGCATCACAATTGAAGTTAATGTTCATGGTTGCTCTCATTTTCGCTGTGA TGATTCATCATCCTGCAGGTGCATATGATCCATTGGATCCAAATGGGAACATAACTATCAAATGGGATGTCATGTCGTGGACTCCAGATGGTTATGTGGC CACCGTAACGATGACCAACTTCCAGATGTCGAGGCACATAATGAGCCCCGGCTGGACACTGTCGTGGTCATGGGCTAAGAAAGAAGTGATATGGTCAATG GTAGGAGCTCAAACCACAGAGCAAGGTGACTGTTCTAAGTTCAAAGGAAATGTACCTCATTGCTGTGAGAAGACTCCAACAGTTGTGGACTTGCTCCCTG GAGTTCCTTACAACCAGCAATATTCCAATTGTTGCAAAGGCGGTGTCATGGCTGCATGGGGTCAAGACCCTTCAGCTGCAGTCTCAGCTTTTCAGATCAG CGTTGGTCAGGGTGGTACAACCAATAAGACTGTCAAACTTCCAAAGAACTTCACTTTGCTTGGTCCTGGATTAGGGTATACTTGTGGCCCTGCAAAGGTT GTTCCTTCTACTGTGTTCATGACTGCGGATCGCAGGCGAAAAACACAAGCACTTATGACTTGGAATGTGACATGTACATACTCACAGATCCTAGCCTCCA GACACCCGAGCTGCTGTGTCTCATTCTCAACATTCTACAATGAGACAATCACTCCTTGTCCTTCCTGTGCCTGTGGTTGTCATAGCAAAAGCAGCTGTAT AACGAGTAACTCAAAGGAAGCTCATAAGAAAGGTGTGAACACTCCGAAGAAGGATAACACTCCACTTCTGCAATGCACTCGGCATATGTGCCCCGTTCGC ATCCACTGGCATGTGAAGGTGAACTACAAAGACTACTGGCGAGCGAAGATTGCAGTGACCAACTTCAACTACAAGATGAACTACACGCAATGGACTCTCG TCGTTCAGCATCCTAATCTCAACAATGTCACTCAGGTCTTCAGCTTCGATTACAAGCCTCTTGTCGCGTACCAATCCATAAATGATACCGGGATGTTCTA CGGCATGAAGTTTTACAACGATCTTATAATGGAAGCTGGACCTTTCGGGAATGTGCAATCCGAAGTGCTTATGAGGAAGGACAAGGATACCTTCAGCCTC AAGCAAGGATGGGCGTTTCCGAGGAAAGTTTACTTCAATGGAGATGAATGCATGCTTCCGCCACCTGATGCTTATCCTTACCTCCCAAATGTTGCTTGTC CAATCCCAGTCCCATTTCAAACAATCGTAGCTTGCTTCTTCCTTATGCTGCAGTACATTCTGTGA
AA sequence Show only first row Show all	>Lus10034670 pacid=23162823 polypeptide=Lus10034670 locus=Lus10034670.g ID=Lus10034670.BGIv1.0 annot-version=v1.0 MDDEVQQSCQWQKPTLSASQLKLMFMVALIFAVMIHHPAGAYDPLDPNGNITIKWDVMSWTPDGYVATVTMTNFQMSRHIMSPGWTLSWSWAKKEVIWSM VGAQTTEQGDCSKFKGNVPHCCEKTPTVVDLLPGVPYNQQYSNCCKGGVMAAWGQDPSAAVSAFQISVGQGGTTNKTVKLPKNFTLLGPGLGYTCGPAKV VPSTVFMTADRRRKTQALMTWNVTCTYSQILASRHPSCCVSFSTFYNETITPCPSCACGCHSKSSCITSNSKEAHKKGVNTPKKDNTPLLQCTRHMCPVR IHWHVKVNYKDYWRAKIAVTNFNYKMNYTQWTLVVQHPNLNNVTQVFSFDYKPLVAYQSINDTGMFYGMKFYNDLIMEAGPFGNVQSEVLMRKDKDTFSL KQGWAFPRKVYFNGDECMLPPPDAYPYLPNVACPIPVPFQTIVACFFLMLQYIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	0	1
AT1G79620			Leucine-rich repeat protein ki...		Lus10021003 [exp]	2.2	0.9827
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	2.8	0.9818
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	3.0	0.9812
					Lus10043486 [exp]	3.5	0.9797
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Lus10010015 [exp]	3.6	0.9744
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Lus10027221 [exp]	4.0	0.9765
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10031850 [exp]	6.6	0.9757
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	6.7	0.9761
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034624 [exp]	6.9	0.9752
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	7.4	0.9785

Compare expression of checked genes

Lus10034670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.