Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60920 732 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 695 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 679 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 631 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 441 / 4e-150 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 239 / 2e-75 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 154 / 1e-39 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 150 / 3e-38 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G20580 132 / 5e-32 COBL10 COBRA-like protein 10 precursor (.1) AT4G27110 130 / 1e-31 COBL11 COBRA-like protein 11 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007986 [exp] 787 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 787 / 0 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 697 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 676 / 0 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10017863 [exp] 618 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 615 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 615 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 614 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 598 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060000 [exp] 769 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 712 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060100 [exp] 637 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 618 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 602 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 597 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 595 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 560 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 477 / 1e-164 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 406 / 1e-136 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10034671 pacid=23162791 polypeptide=Lus10034671 locus=Lus10034671.g ID=Lus10034671.BGIv1.0 annot-version=v1.0 ATGGATTCCTCTTGGTTTGCCAGTTTACCAGCCAAGCTATGCATTCCAGGAATACTGCTCATCTTCTTGCTTTCTGCATCTGCTTTCACTTGCACGGAAG CTTATGATCATGCTTTGGATCCTAATGGGAACATCACCATCAAATGGGACATCATAAACTGGACTCCAGATGGTTATGTTGCTGTTGTTACAATGTACAA CTTGCAGAAGCATCGCCGTATCGAAGCACCAGGGTGGACAATGGGGTGGTCATGGGCTAAAAAGGAAGTGATTTGGAATATGTTCGGAAGCCAAACTACA GAACAAGGAGATTGTTCCAAGTATAAAGGCAACATACCTCATTGCTGTAAGAAAACTCCGACTGTTGTCGATTTGTTACCTGGCACTCCTTACAACCAGC AGATTGCCAACTGTTGCAAAGGAGGAGTGCTTAAAGCTGGTGCAGCTTCCGCTTTTCAACTTAGTGTAGGAGCTGCTGGTACCACTAACAGAACTGTTAA GGTACCCAGGAACTTCACCCTGCTAGCACCAGGTCCTGGTTATACCTGTGGCCCGACAAAGATTGTGAGGCCTACTAAATTTTTGAGTGCAGATAGAAGG AGGGTTACTCAAGCTATGAAAGCTTATGATGCTTTGGACCCTAATGGGAACATCACCATCAAATGGGACATCATAAGCTGGACTCCAGATGGTTATGTTG CTGTTGTTACCATGTACAACTTCCAGCAGTATCGCCATATTCAAGCACCAGGGTGGACAATGGGGTGGACATGGGCTAAAAAGGAAGTGATTTGGAATAT GATGGGAAGCCAAACTACTGAACAAGGAGATTGTTCCAAATATAAAGGGAATGTACCTCATTGCTGCAAGAAAACTCCAACTGTTGTCGACTTATTGCCC GGCACTCCTTACAACCAGCAGATCGCCAACTGCTGCAAAGGCGGAGTGCTTAACGCTTGGGCTCAGGACCCGGCTGGTGCAGTTTCCTCTTTTCAAGTTA GTGTAGGAGCTGCTGGTACCACTAACAAAACTGTTAGGGTACCAAAGAACTTCACCCTGCTAGGACCAGGTCCTGGTTATACCTGTGGCCCGGCTAAGGT TGTGAGACCTACTAAATTTTTGAGTCCAGATAGAAGGAGGGTTACTCAAGCTTTGATGACCTGGAACGTTACATGCACATACTCACAATTCCTGGCACAA AAGACACCATCTTGTTGTGTATCTCTGTCATCATTCTACAATGACACTATTGTGGGATGTCCGACTTGCGCATGTGGCTGTCAAAACAAAACGTCTGGGA GCTGCGTAAATCCGGACTCTCCACATTTAGCCTCGGTGGTTTCAGGTCAAGGAAAACAAGATCTCGCACCTTTGGTGCAGTGTACCAAGCATATGTGTCC GATCCGGATCCACTGGCATGTGAAGCTTAACTATAAGGAGTACTGGAGAGTGAAAGTGACCATCACAAATTTCAATTACAGAATGAATTACACACAATGG AATCTAGTGGTGCAACACCCCAACTTTGACAACCTTACCCAGCTTTTCAGCTTCAACTACAAGTCCTTAACTCCTTATGATGGTTTCAATGATACAGCTA TGCTATGGGGAGTCAAGTTCTACAACGATTTTCTTTCGCAAGCTGGCCCCTTAGGGAATGTCCAGTCAGAGCTTCTATTCCGGAAAGATTCATCAACTTT CACATTCGAGAAAGGATGGGCTTTCCCCAGGAGGATATACTTTAATGGTGACAACTGTGTGATGCCTCCACCAGATGCATATCCATGGTCGCCTAATGAT GGTCACCGGTCATCAACCAAGTCTCTTCTTCGACCTCTCGTCGCAGCGTTGTTGTCTATCATGATCCTCGTAGTTTGTGCGTGA
AA sequence Show only first row Show all	>Lus10034671 pacid=23162791 polypeptide=Lus10034671 locus=Lus10034671.g ID=Lus10034671.BGIv1.0 annot-version=v1.0 MDSSWFASLPAKLCIPGILLIFLLSASAFTCTEAYDHALDPNGNITIKWDIINWTPDGYVAVVTMYNLQKHRRIEAPGWTMGWSWAKKEVIWNMFGSQTT EQGDCSKYKGNIPHCCKKTPTVVDLLPGTPYNQQIANCCKGGVLKAGAASAFQLSVGAAGTTNRTVKVPRNFTLLAPGPGYTCGPTKIVRPTKFLSADRR RVTQAMKAYDALDPNGNITIKWDIISWTPDGYVAVVTMYNFQQYRHIQAPGWTMGWTWAKKEVIWNMMGSQTTEQGDCSKYKGNVPHCCKKTPTVVDLLP GTPYNQQIANCCKGGVLNAWAQDPAGAVSSFQVSVGAAGTTNKTVRVPKNFTLLGPGPGYTCGPAKVVRPTKFLSPDRRRVTQALMTWNVTCTYSQFLAQ KTPSCCVSLSSFYNDTIVGCPTCACGCQNKTSGSCVNPDSPHLASVVSGQGKQDLAPLVQCTKHMCPIRIHWHVKLNYKEYWRVKVTITNFNYRMNYTQW NLVVQHPNFDNLTQLFSFNYKSLTPYDGFNDTAMLWGVKFYNDFLSQAGPLGNVQSELLFRKDSSTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWSPND GHRSSTKSLLRPLVAALLSIMILVVCA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10034671 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10004127 [exp]	13.5	0.8243
					Lus10030127 [exp]	15.5	0.7338
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	16.5	0.8048
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10026777 [exp]	17.2	0.8058
AT3G14470			NB-ARC domain-containing disea...		Lus10004126 [exp]	21.5	0.8144
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10008724 [exp]	22.1	0.7358
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	22.2	0.8047
AT5G36930			Disease resistance protein (TI...		Lus10029860 [exp]	27.5	0.7825
AT5G47610			RING/U-box superfamily protein...		Lus10027023 [exp]	35.0	0.7717
AT1G11915			unknown protein		Lus10026760 [exp]	39.5	0.7604

Compare expression of checked genes

Lus10034671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.