Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26355 91 / 1e-24 SP1L1 SPIRAL1-like1 (.1) AT2G03680 82 / 3e-21 SKU6, SPR1 spiral1 (.1.2) AT1G69230 82 / 3e-21 SP1L2 SPIRAL1-like2 (.1.2) AT5G15600 77 / 2e-19 SP1L4 SPIRAL1-like4 (.1) AT3G02180 75 / 3e-18 SP1L3 SPIRAL1-like3 (.1.2.3) AT4G23496 67 / 1e-15 SP1L5 SPIRAL1-like5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037069 [exp] 92 / 4e-25 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10000046 [exp] 90 / 2e-24 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10036916 [exp] 90 / 2e-24 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10026672 [exp] 86 / 6e-23 AT1G26355 149 / 4e-48 SPIRAL1-like1 (.1) Lus10026670 [exp] 86 / 8e-23 AT1G26355 150 / 1e-48 SPIRAL1-like1 (.1) Lus10004642 [exp] 85 / 3e-22 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10032988 [exp] 77 / 4e-19 AT1G69230 99 / 8e-28 SPIRAL1-like2 (.1.2) Lus10032297 [exp] 71 / 5e-17 AT1G69230 98 / 7e-28 SPIRAL1-like2 (.1.2) Lus10024667 [exp] 70 / 7e-17 AT4G23496 74 / 2e-19 SPIRAL1-like5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097000 [exp] 89 / 4e-24 AT1G26355 127 / 2e-39 SPIRAL1-like1 (.1) Potri.015G059100 [exp] 89 / 7e-24 AT1G26355 98 / 1e-27 SPIRAL1-like1 (.1) Potri.017G095200 [exp] 86 / 6e-23 AT1G69230 94 / 2e-26 SPIRAL1-like2 (.1.2) Potri.010G157600 [exp] 84 / 5e-22 AT1G26355 120 / 1e-36 SPIRAL1-like1 (.1) Potri.001G100100 [exp] 71 / 4e-17 AT4G23496 81 / 2e-21 SPIRAL1-like5 (.1) Potri.003G131600 [exp] 71 / 5e-17 AT4G23496 81 / 4e-21 SPIRAL1-like5 (.1) Potri.T124504 [exp] 54 / 1e-09 AT1G19270 182 / 3e-53 DA1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034675 pacid=23162890 polypeptide=Lus10034675 locus=Lus10034675.g ID=Lus10034675.BGIv1.0 annot-version=v1.0 ATGGGTCGTGGAGTTAGCAGTGGCGGAGGCCAGAGTTCTCTTGGGTACCTCTTTGGAAGTGGTGAGGCTACCGCTCCAAAGCCAGCACCAGCTGCTGATA CTACTAATACTGCTCCACACAGAGTGGAACTTCAGGCTGTGGCCGCTGAGCCTGCTCAGGCTGCTGCACCTCCAGCTCCGGCTCCAGAGGGCACCAAGCA GATTCCAGCAGGTGTTGCTGTTGGTGGGAGCAAAACCAACAACTACTTCCGCGCTGATGGCCAGAACACTGGCAATTTCCTCACTGACCGACCATCAACA AAGGTACATGCGGCACCTGGAGGTGGGTCTTCTTTGGGCTATCTGTTTGGCGATGGCAAGCAGTGA
AA sequence Show only first row Show all	>Lus10034675 pacid=23162890 polypeptide=Lus10034675 locus=Lus10034675.g ID=Lus10034675.BGIv1.0 annot-version=v1.0 MGRGVSSGGGQSSLGYLFGSGEATAPKPAPAADTTNTAPHRVELQAVAAEPAQAAAPPAPAPEGTKQIPAGVAVGGSKTNNYFRADGQNTGNFLTDRPST KVHAAPGGGSSLGYLFGDGKQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10034675 [exp]	0	1
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	2.8	0.8830
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10020121 [exp]	3.9	0.8680
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10019000 [exp]	4.5	0.8489
AT5G63410			Leucine-rich repeat protein ki...		Lus10029659 [exp]	4.7	0.8276
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	4.9	0.8587
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	5.5	0.8570
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	6.9	0.8417
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	8.0	0.8496
AT3G07210			unknown protein		Lus10025908 [exp]	8.1	0.8779
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	10.6	0.8509

Compare expression of checked genes

Lus10034675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.