Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26190 215 / 7e-59 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 145 / 2e-39 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 130 / 6e-32 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 113 / 3e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017858 [exp] 1035 / 0 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 342 / 3e-104 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 334 / 2e-100 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 211 / 1e-62 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 168 / 4e-47 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 121 / 6e-31 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 87 / 2e-19 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 76 / 3e-15 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059000 [exp] 308 / 1e-97 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 243 / 6e-70 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 214 / 2e-64 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 179 / 4e-51 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10034676 pacid=23162785 polypeptide=Lus10034676 locus=Lus10034676.g ID=Lus10034676.BGIv1.0 annot-version=v1.0 ATGTCGGTTGAAAAGGATGCATGCATGGAAAATATTCTATCTTGTGTCGAGACGGAACGCTCACAGATAATGAAAAAGAGGAAAAAGAAACGGCTTGAGA GTACAAAGTGCTCAGCTAGTAATTCTCTGGTTGGTGGTGAAAACAACGATGTCGATAAGGCTGGACTTGAGGCTAATTCTTTGAAAGATTCCGATAGGGA ACATAAGAAAGAATCAGTTACCTTAATGGAGGAAACCAAAAAGAAGAAGAAGAAGCGCAATAAAGGTTTGGATAGTCCCCAACCCACAAAAATGCTTCCA TCACAAGAAGAACATATTGAAAATATGCGGAACTTAAGTTGTGATTCTCTAGCTGACATTTCAGGGAACACTTTTGGCGAATCGGTTAAGTATGTCAGTG AGACTGGCGTTGATGCTAAATTAAAGATAGATTCAAATCCTGCGACAGAAATGATTACTGTACATGAAGAAGGAAGGAAACGGAAAAAACGGAAGAAAGA TAGGAGCAGTATGCATCCTGCAGAATTACTTGCATCACAAGATGAAGAACAGTTAGAGAAGATAGAGAGCATTAGTTGTGATTCTCAGGCTTACAATTCT GTAGCGAAGGGTGCAGTTTGTCGTACAGCCAGTCATGTGAAGGAGAATGAAGTTGATGTTGAATCAAAGAAAGATTTGAAGACTACCCAGGCTATAGAGT CCACCTCCTTCCAGGAAGGGAGGATGGAAAAGAGAAGGCGGAAGAAAGATCTGATAATAGATGAGAATTCTTCCCTGGCTACAGAGTCAGCTACATTACA GAAAGGGGAAAAGAAAAAGAAGAAGCAGAGAAAAGATTCGAATAGTTCCAATACAAGTGATTTGGTTACATCACAAGAGGAAAAAAAGCAAAAGAAGAAG CAGAAAAAAGATTTGAATGGCTCCCAAACCATTCAATTGCTTACATCAGAGGAGGAGGAGAAGAAGAAAAGCAAGAAGCGGAGGAAAAGTGCAAAAAGTT CTTGTCTTGATGAGGCAGACGTTGATAATAATAATAAGAAGATGGATGCAAATAGTTGTCAGGCTACAGAACCAAATGAATTACAGGAGGAAGGAAAGAA ACGGAAGAGGCAGAAGAAAGGCTTGAAGTGTTTGGAGCCTTCTCAATCCCTGACTTCAACTCTGGAAGATAAAAAAGACAAGAAGCAGAAGAAATCCTTG GATGATGCGCTGCCTGTGGATGTATTTCCATTACAAGAGGCACGGCGGAAAATGACCCTAGAGAAGAACACCAATTCTAGCTGTTCTGTCAGCAACAAGA CAACAGAAATGTTGAATTGCATCAATGTGGATGTGCCTATTGAAAAGGACATGATACCGCATGCTTGTAAGAAGCTTCTCATCCTTGATGTAAATGGGCT TTTAGCTGATTTTGTTCTGCACACAGAGCGCCTAGCAACACGGAAGCCTGACCTTTACCTCCGGGGGAAATCAGTTTACAGAAGGCCCTACTGTGATGAT TTTATTCGCTTCTGCTTGGAGAATTTTAATGTTGGTGTTTGGTCGTCAAGGGTCAAGAAAAACTTGAGCCAAGTTGTCAGGTTTCTCTTTGAACGTACAG AACGCAAACTGCTATTCTGTTGGGACCGATCACACTGCACAAATACAGGCTTAAACACTGTTGAAGACAAGAACAAACCGCTGGTTTTAAAAGAATTGGA AAAAGTATGGAGGAAGATTCCTGCAGGACGTGGTGAGGCCTTTGATGCATCAAACACACTACTGCTGGACGATTCACCTTATAAGGCTTTATGCAATCCT GTACATACAGCTGTATTTCCCCATTCGTACAAGTGCACTGATGCTGAAGATTCTTCACTAGGACCAGAAGGGGATCTTCGCAAATATCTGGAACGGTTAG CCAAAGCACCAAATGTTCAAGAGTTTGTGTCGCAAAATCCGTTTGGTCAAAGACCTATTACAGCATCAGACCCAGATTGGCCTTTTTATCGCCAGATCAT AGCCAAGTCAAACAGTAGGCAAACAAGGTGTATCCAGATATCGAAAACGAAATCGATCGATGTCAACCATCGCCCACAGCAGCATATCAGATTTGAATGA
AA sequence Show only first row Show all	>Lus10034676 pacid=23162785 polypeptide=Lus10034676 locus=Lus10034676.g ID=Lus10034676.BGIv1.0 annot-version=v1.0 MSVEKDACMENILSCVETERSQIMKKRKKKRLESTKCSASNSLVGGENNDVDKAGLEANSLKDSDREHKKESVTLMEETKKKKKKRNKGLDSPQPTKMLP SQEEHIENMRNLSCDSLADISGNTFGESVKYVSETGVDAKLKIDSNPATEMITVHEEGRKRKKRKKDRSSMHPAELLASQDEEQLEKIESISCDSQAYNS VAKGAVCRTASHVKENEVDVESKKDLKTTQAIESTSFQEGRMEKRRRKKDLIIDENSSLATESATLQKGEKKKKKQRKDSNSSNTSDLVTSQEEKKQKKK QKKDLNGSQTIQLLTSEEEEKKKSKKRRKSAKSSCLDEADVDNNNKKMDANSCQATEPNELQEEGKKRKRQKKGLKCLEPSQSLTSTLEDKKDKKQKKSL DDALPVDVFPLQEARRKMTLEKNTNSSCSVSNKTTEMLNCINVDVPIEKDMIPHACKKLLILDVNGLLADFVLHTERLATRKPDLYLRGKSVYRRPYCDD FIRFCLENFNVGVWSSRVKKNLSQVVRFLFERTERKLLFCWDRSHCTNTGLNTVEDKNKPLVLKELEKVWRKIPAGRGEAFDASNTLLLDDSPYKALCNP VHTAVFPHSYKCTDAEDSSLGPEGDLRKYLERLAKAPNVQEFVSQNPFGQRPITASDPDWPFYRQIIAKSNSRQTRCIQISKTKSIDVNHRPQQHIRFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10034676 [exp]	0	1
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	1.0	0.9526
AT5G14050			Transducin/WD40 repeat-like su...		Lus10038375 [exp]	4.6	0.9391
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	5.8	0.9494
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031844 [exp]	6.5	0.9322
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	7.7	0.9363
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	9.5	0.9288
AT5G20045			unknown protein		Lus10019440 [exp]	9.8	0.9280
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	10.0	0.9348
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10011251 [exp]	12.6	0.9218
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Lus10039631 [exp]	13.6	0.9096

Compare expression of checked genes

Lus10034676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.