Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74160 523 / 5e-172 unknown protein AT1G18620 421 / 2e-133 unknown protein AT5G15580 202 / 2e-54 LNG1 longifolia1 (.1) AT3G02170 179 / 2e-46 LNG2 longifolia2 (.1) AT3G63430 59 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017857 [exp] 1365 / 0 AT1G74160 752 / 0.0 unknown protein Lus10021148 [exp] 274 / 2e-83 AT1G74160 236 / 9e-69 unknown protein Lus10024836 [exp] 59 / 2e-08 AT3G63430 246 / 3e-72 unknown protein Lus10003090 [exp] 58 / 3e-08 AT3G63430 236 / 1e-68 unknown protein Lus10014716 [exp] 58 / 3e-08 AT3G63430 227 / 2e-65 unknown protein Lus10018750 [exp] 57 / 6e-08 AT3G63430 248 / 6e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058900 [exp] 779 / 0 AT1G74160 795 / 0.0 unknown protein Potri.012G061900 [exp] 735 / 0 AT1G74160 730 / 0.0 unknown protein Potri.017G095000 [exp] 353 / 2e-107 AT1G74160 399 / 3e-122 unknown protein Potri.005G216300 [exp] 56 / 1e-07 AT3G63430 245 / 3e-72 unknown protein Potri.002G046700 [exp] 49 / 1e-05 AT3G63430 327 / 8e-103 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034678 pacid=23162732 polypeptide=Lus10034678 locus=Lus10034678.g ID=Lus10034678.BGIv1.0 annot-version=v1.0 ATGAAGGCTTCCATCTCCAATTCAAAACGAAACAGCAATTACCTTGGAAGAGACTCGCAAAATATGACAAACTCATCAGGAAATCAGAACAGGCCAGCAA GTCTGGTTGCCAAGTTGATGGGATTGGAGACATTACCCGATTCTGAACTGGCTAGTCAGTCAGGTTCACTCAAGACATCACTGGATGATCGTACCGATTC CTTCTCAAGATCGTTCACGAAAAACAATCTAAATGCAGGGATCAGGATTCCCAAGTCTCCAAGAAGCTTGATGAAAGAGCCAGTATCACCACGTCGGAAG AATCCTGATTTGCAAATGAAACCCATTTCAAAGTTTCCAATTGAACCAGCTCCGTGGAAGCAATCAGATGGAGCTCGAGGTGCTCAGAAATCACCTTTCA AGGTTGCAAAAGCTCCAGCTAATACACAGAGCTCCTTTCCTTCAGTGTACAGTGAGATTGAGAAGAGATTGAAGGATCTTGAGTTCAAACAATCTGGCAA AGATCTGAGAGCTCTTAAACAGATTCTAGAAGCAATGCAGGCAAAGGGACTTCTCGAGACCGGGAAAGAGGAGCAAGATCCAAAATTTGTTACTCAACCT GATTTTGATCTCAAGAGTGCCGCTCCGAGTCAAAGGCCTGGATTTAGGCAACAAAACGTGCAGGAAAATTTGGCTAGTGCTTCTAGAACTAGAGCTTCTC GAACTTATGACTCCCCAATAGTGATCATGAAACCAGCCAAACTGGCTGAGAAATCTGGTATTCCTCCTTCCTCAATGATCCCGATCGATGGCCTTCCGAT GCTTCGAAGAATTCAGAATGGTGGGTATGCAAGCAGTAGACAGGGAACATCAGCTAGTAGCCGGGCTGTTAAAGACCAGTCACCAAGAAACACTCACAGG GAACCGATTTCAATTCCCGGTAACAAGAAAACAAATGTTAATAGGGGCATAAGATCAAATCAGACTTCTTCAAAGCCTCAACTTCCAACAAGAGAAAGCT CAAGCAGCTCTATAAAGAGCACGGGATCAGTGAGTCCAAGACTGCAGCAGAGGAAAGTTGAGTTGGAGAGGAGATCTCGCCCGCCAACTCCCCCGAGTGA TACGAACAAACCAAGAAGACAGTCTGGAAGACAGCCAACAGAATCCAGTTCTCCCGGTGGCAAATACAGGATGAGGGCTCCTAAACAATCACAGAATGAT GACCAACTGAGCCAGATAAGTAATGAGTCAAGAACTTCTAGTTATCAGGGTGATGACATGTCGATGCATTCGGATAGCAGCACTGTTGTGTTTGACCTGA AGACGGATGTGGAGGTCACAAGTGCTGACCTATCTACTGCTGAAAAAGCTACTAATTTTGCGGTTTCTGCTTCAATGCACAATAAAGAAACTTCAAAGTT TGAGGAGGAGGTATCCATGGTGGAACTAGTCGCTACTCCGGAGCAACCTAGTCCTGTTTCAGTCCTTGATTCTTCTGCGTACAAAGATGATGTCATCTCC CCTATCAAGCAGACACCTAATATGCCTGAAGGTGATGGTACTCAGAGTTCCATAGATTGTCAAAATGATGACCAGTTGCACTCATCAGAATCCCTCTCCA ACAGCACAGGTTCCACTCTCACCTCAGATATGAGCCGCAAGAAGTTCAAGAACATTGATAACTTGGTACAAAAGCTTACACGGCTAAACTCCACGCACGA TGAAGCTAGCACGGACTATATAGCATCACTCTGCGAGAAGAATACCAATCCAGACCATCGATACATTTCCGAGATCCTGTTAGCTTCAGGCCTTCTACTT AGAGACCTTGGGAGCTCAGGCCTAGCAACATTTCAGTTGCACCCATCGGGCCATCCCATCAACCCCGAACTGTTTTGTGTCCTTGAGCAGACCAAGGCCA GCAATCTGCAAACAAAGGAAGAGAACATTCCTCTAGAAACTTGCCATGCAAGGCGAACTGCTGAGAAGTTCCACCGCAAACTCATATTCGACGCTGTGAA TGACATCCTTGTAACGAAGTTAGACTTGCCAGGTGCGTCGCCTGTACCACCACGGATGACGTCTAGTAATAAGCTGGCCAAGAAGACTATCACAGCGCAA AAGCTTCTGAAGGAGCTGTGTTCGGAGATTGAACAGCTTCAAGTTGCCAAGAAACCGGAAGAGGAGGAGGAAGAGGATGGTTTAAAAGCTGTTTTATGCG AAGATGTGGAACGAAGATCGGAGAGTTGGACAGTGTTTGATAACGAGGTATCTGGGTTGGTTCTGGATGTTGAAAGGCTGATATTTAAAGATTTAGTTGG TGAGATTGTGATGGGAGAGACGGCCGGTTCGCAGAGCAAAATAGGTAGGAGGAGGCAGCTGTTTGCTAAGTAG
AA sequence Show only first row Show all	>Lus10034678 pacid=23162732 polypeptide=Lus10034678 locus=Lus10034678.g ID=Lus10034678.BGIv1.0 annot-version=v1.0 MKASISNSKRNSNYLGRDSQNMTNSSGNQNRPASLVAKLMGLETLPDSELASQSGSLKTSLDDRTDSFSRSFTKNNLNAGIRIPKSPRSLMKEPVSPRRK NPDLQMKPISKFPIEPAPWKQSDGARGAQKSPFKVAKAPANTQSSFPSVYSEIEKRLKDLEFKQSGKDLRALKQILEAMQAKGLLETGKEEQDPKFVTQP DFDLKSAAPSQRPGFRQQNVQENLASASRTRASRTYDSPIVIMKPAKLAEKSGIPPSSMIPIDGLPMLRRIQNGGYASSRQGTSASSRAVKDQSPRNTHR EPISIPGNKKTNVNRGIRSNQTSSKPQLPTRESSSSSIKSTGSVSPRLQQRKVELERRSRPPTPPSDTNKPRRQSGRQPTESSSPGGKYRMRAPKQSQND DQLSQISNESRTSSYQGDDMSMHSDSSTVVFDLKTDVEVTSADLSTAEKATNFAVSASMHNKETSKFEEEVSMVELVATPEQPSPVSVLDSSAYKDDVIS PIKQTPNMPEGDGTQSSIDCQNDDQLHSSESLSNSTGSTLTSDMSRKKFKNIDNLVQKLTRLNSTHDEASTDYIASLCEKNTNPDHRYISEILLASGLLL RDLGSSGLATFQLHPSGHPINPELFCVLEQTKASNLQTKEENIPLETCHARRTAEKFHRKLIFDAVNDILVTKLDLPGASPVPPRMTSSNKLAKKTITAQ KLLKELCSEIEQLQVAKKPEEEEEEDGLKAVLCEDVERRSESWTVFDNEVSGLVLDVERLIFKDLVGEIVMGETAGSQSKIGRRRQLFAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74160			unknown protein		Lus10034678 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10012845 [exp]	1.4	0.9071
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	1.7	0.8824
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10030493 [exp]	3.7	0.8930
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	4.5	0.8776
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	4.5	0.8628
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	4.9	0.8357
AT4G32000			Protein kinase superfamily pro...		Lus10001937 [exp]	5.1	0.8006
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	6.5	0.8288
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	7.7	0.8339
AT5G62350			Plant invertase/pectin methyle...		Lus10027198 [exp]	9.4	0.8322

Compare expression of checked genes

Lus10034678 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.