Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60970 159 / 2e-45 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT5G08070 137 / 2e-38 TCP TCP17 TCP domain protein 17 (.1) AT3G02150 134 / 1e-36 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) AT1G30210 109 / 4e-27 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT4G18390 106 / 9e-26 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT1G53230 96 / 6e-22 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G15030 92 / 2e-20 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT2G31070 86 / 2e-18 TCP TCP10 TCP domain protein 10 (.1) AT1G67260 72 / 7e-14 TCP TCP1 TCP family transcription factor (.1.2) AT1G68800 72 / 1e-13 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017856 [exp] 329 / 6e-112 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Lus10032984 [exp] 115 / 3e-29 AT3G02150 142 / 3e-40 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Lus10023297 [exp] 109 / 2e-26 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10038512 [exp] 109 / 6e-26 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10000463 [exp] 89 / 1e-19 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10003078 [exp] 72 / 9e-14 AT1G67260 105 / 2e-25 TCP family transcription factor (.1.2) Lus10034072 [exp] 72 / 9e-14 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10035055 [exp] 68 / 1e-12 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 68 / 2e-12 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058800 [exp] 164 / 4e-47 AT5G60970 177 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) Potri.004G116100 [exp] 139 / 5e-38 AT3G02150 173 / 1e-50 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.017G094800 [exp] 135 / 2e-36 AT3G02150 161 / 4e-47 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2) Potri.004G065800 [exp] 110 / 9e-27 AT4G18390 151 / 2e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.011G083100 [exp] 108 / 5e-26 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Potri.001G375800 [exp] 92 / 1e-20 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.013G119400 [exp] 91 / 3e-20 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G096600 [exp] 91 / 6e-20 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.019G091300 [exp] 90 / 6e-20 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.017G112000 [exp] 68 / 2e-12 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10034679 pacid=23162825 polypeptide=Lus10034679 locus=Lus10034679.g ID=Lus10034679.BGIv1.0 annot-version=v1.0 ATGAGGAGGGTTCCAATGAAGAAAGATCAAATGGAAGAACAAGAAGGAGGAGCAAAGCAAGAAGACAACGTAGGAGATCATCATCAGCAAGAAAACATAT TAACAGCCAATTTGATGAACCAGCCAAGAACAACAGCAGCAGCACCACCAGGAGGAGGAAGCAGTAGCAGTACTAGTAGGTCAACGACATCATCACAATG GTCAGCGTTTCGAAACCCAAGGATCGTGCGAGTCTCACGAACATTCGGAGGGAAGGACAGGCATAGTAAAGTGTGCACCGTCAGAGGGTTGAGAGACAGG AGGATCCGTCTCTCGGTCCCCACAGCCATCCAGCTGTACGACCTCCAAGACCGGCTCGGACTAGGCCAACCGAGCAAAGTCATCGACTGGCTCATCGAGA ACACGTCCGACGACATCGACAAGCTCCCGCCTCTCCAACTCCCACATTCGTTCGGTTTTGAAGCTGCATCCGGTGGTGGTGGACACCTTCATCAGTATTA CAACTCTTCGCTGGCTCATATGGCACCCTTCTTCGATTTCGGGAGGCCAGGTACTAGTACCAGTACTAATACTAGTGCTAGTAGTAGTAGTGGTACTAGT GGGTTGTTTGATCAACAACATTTGAACTCTTTGTACCAATGGGGGGATCATCATCATAATCAGAATCACTATCAAAATCAGCTACCTATACTAGGATTGG GGAATAACTATGGACATGATCATAATCATGTATCTAGTAGTAGTGGTGGTAGCGGTGGTGGTGGTGCGAATTTTTTTCTGCCTTCGTCGTATTTGGCACT GTCGAACAATACTACTAATTCGGCTAGTACTAGTACCACTAATTCTCCACATGATCAGCCGACGACAATGTTGATGCCACCACCGCCGCAGCCATATTCA GCTTATAATAATCAGCTGGAGATGATGAGTGATAATCATCATCAGAATTATCAACGACAGCAGCAGCAGTTACACTTTCAGAACGCAACAACGACAAGAC CGACGCCTCATTTCCCTTTCAACATATTCAATGCAGACAACGATCACGACGACCATGGCGGAGGCAGCAGTGGTTCTTGA
AA sequence Show only first row Show all	>Lus10034679 pacid=23162825 polypeptide=Lus10034679 locus=Lus10034679.g ID=Lus10034679.BGIv1.0 annot-version=v1.0 MRRVPMKKDQMEEQEGGAKQEDNVGDHHQQENILTANLMNQPRTTAAAPPGGGSSSSTSRSTTSSQWSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDR RIRLSVPTAIQLYDLQDRLGLGQPSKVIDWLIENTSDDIDKLPPLQLPHSFGFEAASGGGGHLHQYYNSSLAHMAPFFDFGRPGTSTSTNTSASSSSGTS GLFDQQHLNSLYQWGDHHHNQNHYQNQLPILGLGNNYGHDHNHVSSSSGGSGGGGANFFLPSSYLALSNNTTNSASTSTTNSPHDQPTTMLMPPPPQPYS AYNNQLEMMSDNHHQNYQRQQQQLHFQNATTTRPTPHFPFNIFNADNDHDDHGGGSSGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	0	1
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034261 [exp]	1.4	0.9571
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013335 [exp]	2.4	0.9503
AT3G02150	TCP	TFPD, PTF1, TCP...	TEOSINTE BRANCHED1, CYCLOIDEA ...		Lus10032984 [exp]	3.0	0.9453
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	3.5	0.9413
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10043080 [exp]	4.6	0.9156
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Lus10002195 [exp]	4.9	0.8788
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	5.5	0.9190
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Lus10018359 [exp]	6.7	0.9284
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10022638 [exp]	7.9	0.9073
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	8.0	0.9142

Compare expression of checked genes

Lus10034679 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.