Plant FIBer expression Database

Lus10034680 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041572
[exp]
44 / 1e-05 AT3G01860 77 / 1e-16 unknown protein
Lus10035217
[exp]
43 / 4e-05 AT3G27210 79 / 3e-18 unknown protein
Lus10032051
[exp]
43 / 8e-05 AT5G40870 698 / 0.0 URIDINE KINASE-LIKE 1, uridine kinase/uracil phosphoribosyltransferase 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G096050
[exp]
49 / 4e-07 ND /
Potri.001G332500
[exp]
44 / 2e-05 AT3G01860 96 / 3e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10034680 pacid=23162751 polypeptide=Lus10034680 locus=Lus10034680.g ID=Lus10034680.BGIv1.0 annot-version=v1.0
ATGATGGGGGTCATCAAACTGCAGGAAAGAAGAGTAAGTCCTGAGATCATGGCTGAGGCAGCTGAAATGGAGAGCAGCCACAGTAAGGATGAGATTTATG
TGGATTCTCGAGCATGGTTGGGTTCCGATTCCGAGGATGATTACCACAGTGTCAAAGAGCATACTCCTTCGACTCCAACCAGAACAAGAATGTGCATCAA
GAATATATACTACAACAATACACTACAAATCATACCACCACAACCACCAACGCCAACACCAGCAATGACAGAAAGGAAACAGAAGCCACTGGTTGAGTTG
CTTAAAGATCCTTACTGGAATGAGCAACAGATTATTAAAGAAGGGAAAAGGCAGATGCGTCTGGTGGAATTCTTCATTGAGGACAGTTTCTGGGAAAAGG
AGTTTTCTCTTAAGGAAGGGAACAGGGAGATGCGTCTGGTGGGAAATGGCAAGAGGGTTCTCAAGGATGAACCCAAACGTGATGGTTGCTGCGTTCCAAG
CTTTGGGACAAGGTTCTGGTCCAAGAAAAGGAAGACCAAGGCTACTGTTTCGTAG
AA sequence
>Lus10034680 pacid=23162751 polypeptide=Lus10034680 locus=Lus10034680.g ID=Lus10034680.BGIv1.0 annot-version=v1.0
MMGVIKLQERRVSPEIMAEAAEMESSHSKDEIYVDSRAWLGSDSEDDYHSVKEHTPSTPTRTRMCIKNIYYNNTLQIIPPQPPTPTPAMTERKQKPLVEL
LKDPYWNEQQIIKEGKRQMRLVEFFIEDSFWEKEFSLKEGNREMRLVGNGKRVLKDEPKRDGCCVPSFGTRFWSKKRKTKATVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G27210 unknown protein Lus10034680
[exp]
0 1
AT1G20510 OPCL1 OPC-8:0 CoA ligase1 (.1.2) Lus10038667
[exp]
11.1 0.6254
AT5G53110 RING/U-box superfamily protein... Lus10025491
[exp]
12.5 0.6558
AT3G42150 unknown protein Lus10031451
[exp]
22.0 0.6067
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Lus10039772
[exp]
26.7 0.5911
Lus10017380
[exp]
32.1 0.5924
AT3G07610 IBM1 increase in bonsai methylation... Lus10004602
[exp]
34.3 0.5450
AT3G28860 ABCB19, ATMDR11... P-GLYCOPROTEIN 19, MULTIDRUG R... Lus10015595
[exp]
40.5 0.5901
AT1G64090 RTNLB3 Reticulan like protein B3 (.1.... Lus10013099
[exp]
51.6 0.5683
AT2G30300 Major facilitator superfamily ... Lus10015470
[exp]
58.2 0.5288
AT1G59970 Matrixin family protein (.1) Lus10041294
[exp]
60.7 0.5399

Lus10034680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.