Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08060 186 / 5e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017854 [exp] 267 / 5e-94 AT5G08060 186 / 5e-62 unknown protein Lus10017855 [exp] 243 / 3e-84 ND 170 / 2e-55 Lus10040513 [exp] 214 / 4e-73 AT5G08060 179 / 1e-59 unknown protein Lus10021149 [exp] 192 / 2e-64 AT5G08060 156 / 2e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123700 [exp] 177 / 2e-58 AT5G08060 146 / 3e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034681 pacid=23162755 polypeptide=Lus10034681 locus=Lus10034681.g ID=Lus10034681.BGIv1.0 annot-version=v1.0 ATGGCGAAACCCTCCACCGCCGCGGCGAGCTCATTCCTTCAAATACTGAGGCGCTACATCAAGAAACCGTGGGAGATAACCGGGCCTTGCGCCGATCCGG AATACCGAACTGCCATTCCCAAAGCTGTGGAGTACCGACTTCAATGCCCTGCCACCACAACGCTGCAGCCCATTGTCCCCAACTCCGATCCTGAGACAGT GTTCGACATCAAGTACCACACCCGGGATCAGCGCCGCAACAGGCCGCCGATCAAGCGCACCCTTCTGAAGAAGGCCGATGTGGTCAAGATGATGAATGAG AAGACCTTTGAGCCCACCGATTTTCCTCCCGTTTATTTGGTCGGAGCGATGGAGGAGGATATCAATACCCGAGGCGGTGGCTACCAGAAATGA
AA sequence Show only first row Show all	>Lus10034681 pacid=23162755 polypeptide=Lus10034681 locus=Lus10034681.g ID=Lus10034681.BGIv1.0 annot-version=v1.0 MAKPSTAAASSFLQILRRYIKKPWEITGPCADPEYRTAIPKAVEYRLQCPATTTLQPIVPNSDPETVFDIKYHTRDQRRNRPPIKRTLLKKADVVKMMNE KTFEPTDFPPVYLVGAMEEDINTRGGGYQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08060			unknown protein		Lus10034681 [exp]	0	1
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10039485 [exp]	1.0	0.9070
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Lus10038196 [exp]	1.4	0.8787
AT2G42310			unknown protein		Lus10026317 [exp]	1.7	0.8606
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	2.8	0.8412
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Lus10031130 [exp]	3.0	0.8350
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	5.5	0.8260
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	5.7	0.8354
AT1G69910			Protein kinase superfamily pro...		Lus10036691 [exp]	8.8	0.8358
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	10.1	0.8362
AT5G01090			Concanavalin A-like lectin fam...		Lus10017194 [exp]	11.0	0.8126

Compare expression of checked genes

Lus10034681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.