Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26360 1016 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 288 / 2e-90 TCP-1/cpn60 chaperonin family protein (.1.2) AT1G24510 288 / 2e-90 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 262 / 1e-80 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 242 / 7e-73 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G03960 223 / 1e-65 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 218 / 5e-64 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 201 / 2e-57 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 201 / 2e-57 TCP-1/cpn60 chaperonin family protein (.1) AT4G33240 97 / 9e-21 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017853 [exp] 1100 / 0 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10021150 [exp] 1100 / 0 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10040514 [exp] 1024 / 0 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 290 / 9e-91 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 287 / 3e-90 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 287 / 4e-90 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 281 / 1e-87 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 259 / 9e-80 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 249 / 1e-75 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T046300 [exp] 1025 / 0 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 1024 / 0 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 1023 / 0 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 304 / 2e-96 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 288 / 4e-90 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.010G051700 [exp] 285 / 2e-89 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 277 / 3e-86 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 271 / 5e-84 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 266 / 4e-82 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 248 / 3e-75 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10034682 pacid=23162711 polypeptide=Lus10034682 locus=Lus10034682.g ID=Lus10034682.BGIv1.0 annot-version=v1.0 ATGCACGCTCCAGTTCTCGTTCTCAAGGACTCGTTGAAACGCGAGTCTGGACAGAAGGTTCACCATGCTAATATCCAGGCCTCGAAGGCTGTTGCTGACA TTATCCGCACGACCTTGGGTCCTCGATCCATGTTGAAAATGCTACTTGATGCATCTGGAGGGATTGTTGTTACTAATGATGGAAATGCAATTTTACGTGA GTTGGATCTTGCTCATCCAGCAGCCAAGTCAATGATTGAGTTAAGCCGTACACAAGATGAAGAAGTTGGGGACGGAACAACGTCTGTTATTGTTCTTGCT GGAGAAATGCTTCATGTTGCGGAAGCCTTCATTGACAAACATTATCATCCTACAGTCATATGCCGAGCATACAACAAAGCTCTGGAGGATGCTATTACTG TCCTTGATAAAATTGCTATGACGATAGATGTGAATGACCGTGGAACAATGCTGAGCCTAGTGAAGAGCTGCATAGGCACAAAGTTCACTAGTCAGTTTGG TGACTTGATTGCTGATCTTGCCATTGATGCTACCAAAACTGTCGGTGTCGACCTTGGCCAAGGTTTGCGAGAAGTGGATATCAAGAAATACATTAAGGTT GAAAAGGTTCCTGGAGGACAATTAGAGGATTCTAAAGTTCTTAAAGGTGTTATGTTTAACAAGGATGTGGTAGCCCCTGGTAAAATGAGAAGAAAGATCG TTAATCCACGTATCATTCTTCTCGACTGCCCACTAGAATACAAGAAAGGAGAGAACCAAACAAATGCCGAGCTGGTCAAAGAAGAAGACTGGGAACTTCT GCTCAAAATGGAAGAGGAGTACATTGAGAATATCTGTGTGCAGATTCTAAAGTTCAAACCGGATTTAGTGATCACCGAGAAGGGTCTGAGCGATTTGGCG TGCCACTATTTTAGCAAAGCTGGTGTGAGTGCAATCAGAAGGCTGAGGAAAACAGACAATAATAGAATTGCTAAGGCATGTGGTGCTGTTATCGTGAACA GACCTGATGAGTTGCAAGAGTCTGATGTTGGTACTGCAGCTGGGTTGTTTGAGGTTAAGAAAATTGGAGATGAGTTCTTTTCCTTCATTGTTGACTGCAA AGATCCGAAGGCTTGTACAGTTCTCTTGAGAGGTGCCAGCAAGGATCTTCTCAATGAGGTGGAGAGAAACTTGCAGGATGCCATGGGTGTGGCCAGGAAC ATACTTAAGAACCCAAAACTGGTTCCCGGAGGTGGCGCCACTGAGTTGACTGTATCTGCTACATTAAAGCAGAAGAGTTCATCTGTTGAAGGCATTGAAA AGTGGCCTTATGAAGCAGCTGCTATAGCTTTTGAAGCAATTCCACGAACTTTGGCCCAGAACTGTGGTGTTAACGTGATCCGAACAATGACTGCCTTGCA AGGAAAACATGCAAACGGTGAAAATGCATGGACCGGCATTGACGGGAACACTGGTGAAATCACTGACATGAAAGAGAGAAAGATCTGGGATGCTTACAAC GTGAAGGCACAGACCTTCAAAACAGCAATAGAAGCAGCTTGCATGCTGTTGAGGATTGACGACATTGTTAGTGGAATCAAGAAGAAGCAGGCCCCTGGAG CCGGGCCTTCAAAGCCACAAAACGAGAAAGCAGGCCCCTGGAGCCGGGCCTTCAAAGCCACAAATCGAGACTGA
AA sequence Show only first row Show all	>Lus10034682 pacid=23162711 polypeptide=Lus10034682 locus=Lus10034682.g ID=Lus10034682.BGIv1.0 annot-version=v1.0 MHAPVLVLKDSLKRESGQKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLA GEMLHVAEAFIDKHYHPTVICRAYNKALEDAITVLDKIAMTIDVNDRGTMLSLVKSCIGTKFTSQFGDLIADLAIDATKTVGVDLGQGLREVDIKKYIKV EKVPGGQLEDSKVLKGVMFNKDVVAPGKMRRKIVNPRIILLDCPLEYKKGENQTNAELVKEEDWELLLKMEEEYIENICVQILKFKPDLVITEKGLSDLA CHYFSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTAAGLFEVKKIGDEFFSFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMGVARN ILKNPKLVPGGGATELTVSATLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWTGIDGNTGEITDMKERKIWDAYN VKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGPSKPQNEKAGPWSRAFKATNRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	0	1
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	1.7	0.9639
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Lus10043412 [exp]	2.0	0.9544
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	2.4	0.9529
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	3.5	0.9586
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10035786 [exp]	4.2	0.9598
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10010670 [exp]	5.0	0.9541
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	5.9	0.9522
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Lus10007913 [exp]	7.4	0.9252
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	8.3	0.9220
AT1G07970			unknown protein		Lus10038462 [exp]	8.7	0.9424

Compare expression of checked genes

Lus10034682 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.