Plant FIBer expression Database

Lus10034684 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33430 42 / 0.0001 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003542
[exp]
74 / 1e-17 ND /
Lus10021716
[exp]
70 / 1e-15 ND /
Lus10037488
[exp]
72 / 2e-15 AT3G06790 72 / 1e-14 plastid developmental protein DAG, putative (.1.2)
Lus10009694
[exp]
63 / 2e-12 ND /
Lus10036085
[exp]
57 / 7e-10 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G087700
[exp]
40 / 0.0003 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1)
PFAM info
Representative CDS sequence
>Lus10034684 pacid=23162758 polypeptide=Lus10034684 locus=Lus10034684.g ID=Lus10034684.BGIv1.0 annot-version=v1.0
ATGGAACAAACCTGCACATGGTTTGTTAAGCTCAACACTGATGCGGGGATTTTTGGGGAAGAAGGCATGGTAGCTGGAGTGGTGATTAGGAATGATGCGA
GACGTTTTCTCATGGCTGCTGTCATGAAAATTCTTGGAATTTGGCAACCAGATCATGCCGGAGAAATTGCTCTGGAGTTAGGAATGCAGATTGTGGCTCG
TCATGGCTATTTGAAAGTTGAACTGGAGAATGATAGCATGATGGTTATTGAAGGTATCCAAAAAGCCAATGAGGACGCTTCTGAGATTGAGGTCCTATAC
AAGAACATTGGTCGGATTCAACATTGGTTGAACCATGTACAAGGATCTACTAGACTTGTATCCCATGACTCCAATACATTGTTGGGATCAACCAAACTGT
TTTTGAAACTGGACAAAGCATCTATATCTGCGTTGCCCTTCACATTGCCAACTTGTAGCTGCACTACTACTACTGCTGCTGCTACAATCACGGAGATTAG
CAACTTGCCCATGTGA
AA sequence
>Lus10034684 pacid=23162758 polypeptide=Lus10034684 locus=Lus10034684.g ID=Lus10034684.BGIv1.0 annot-version=v1.0
MEQTCTWFVKLNTDAGIFGEEGMVAGVVIRNDARRFLMAAVMKILGIWQPDHAGEIALELGMQIVARHGYLKVELENDSMMVIEGIQKANEDASEIEVLY
KNIGRIQHWLNHVQGSTRLVSHDSNTLLGSTKLFLKLDKASISALPFTLPTCSCTTTTAAATITEISNLPM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10034684
[exp]
0 1
AT4G12110 ATSMO1-1, SMO1-... sterol-4alpha-methyl oxidase 1... Lus10004322
[exp]
3.6 0.7405
AT1G13810 Restriction endonuclease, type... Lus10033589
[exp]
16.5 0.7347
AT1G31790 Tetratricopeptide repeat (TPR)... Lus10037287
[exp]
17.7 0.6649
Lus10039897
[exp]
19.0 0.7381
AT2G30900 TBL43 TRICHOME BIREFRINGENCE-LIKE 43... Lus10020786
[exp]
24.6 0.7373
AT2G34160 Alba DNA/RNA-binding protein (... Lus10021222
[exp]
24.7 0.6982
AT5G66430 S-adenosyl-L-methionine-depend... Lus10036547
[exp]
32.4 0.7077
AT2G28085 SAUR-like auxin-responsive pro... Lus10016130
[exp]
34.6 0.7184
Lus10020933
[exp]
39.5 0.6805
AT1G77460 Armadillo/beta-catenin-like re... Lus10029691
[exp]
41.3 0.6566

Lus10034684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.