Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18640 407 / 2e-143 PSP 3-phosphoserine phosphatase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017851 [exp] 572 / 0 AT1G18640 405 / 7e-143 3-phosphoserine phosphatase (.2) Lus10021156 [exp] 488 / 2e-175 AT1G18640 399 / 7e-141 3-phosphoserine phosphatase (.2) Lus10040521 [exp] 479 / 8e-172 AT1G18640 410 / 3e-145 3-phosphoserine phosphatase (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066200 [exp] 461 / 7e-165 AT1G18640 417 / 3e-148 3-phosphoserine phosphatase (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10034686 pacid=23162869 polypeptide=Lus10034686 locus=Lus10034686.g ID=Lus10034686.BGIv1.0 annot-version=v1.0 ATGGGTTGTTTTGGTTGTTCACGTTCTGATTCTTGCGGTTTTTCTTCTTTCACCGGTCTATGTGATTCGATATCTGCTTTTTTTTCTTCGCAGCTGATAG GTATGGAACGTTTGGTGCATTCATGCACCATTACTCCAATTCATCCTTCTTATAGACGCCATCGTTCTCCTTTCGACACTGAATTTTCCTTACGGTTGAG GAAGAATCTAATGCGAAGCTGTGTTGTTACCATGAAGCAGCATCAGAGATTTGATTTGGTTGCTGCTTCAGCTGAACCACTAAAATCCTCGCCGTTGAGT CAGTTTGATACTTCACTGCCATCTAAAGAGGTGGTTGACCTTTGGAGAAGTGCTGATGCGGTGTGCTTTGATGTCGATAGCACGGTTTGCCTCGATGAAG GCATCGACGAACTTGCAGACTTCTGTGGAGCCGGGGAGGCTGTTGCAGAATGGACAGCGAGGGCAATGGGTGGTTCTGTTCCTTTCGAGCAGGCCTTGGC TGCTCGATTATCTCTGTTCAAACCCTCCCTATCACAACTCCAAGAATTTTTGGAGAAGAGACCTCCAAAGATCTCTCCTGGGATAGATGAGTTAGTAAAG AAGCTCAAGGCCAAGACTATCGATGTTTACCTGATCTCTGGTGGATTTCGGCAGATGATAAATCCTGTTGCTTCAATCCTTGGGATTCCAGTTAAAAATA TATTTGCCAACCAACTTCTATTTGGGAGTTCAGGGGAGTTTGTAGGCTTTGATGCAAATGAGCCTACGTCGAGCAGTGGTGGAAAAGCAACTGCGGTGGA GCAGATAAGAAAGGCTCATGGATACAAAGCTATGGTGATGATTGGGGATGGAGCAACTGATCTTGAGGCTAAAAAACCAGGCGGTGCAGATTTGTTCATC TGCTACGGTGGAGTTCAACTCCGAGAGGGTGTTGCAGCTAAAGCTGACTGGGTAGTCTTTAATTTTGCAGACTTGATGAACTCTCTAGACCTGTCAGGCA GTTAG
AA sequence Show only first row Show all	>Lus10034686 pacid=23162869 polypeptide=Lus10034686 locus=Lus10034686.g ID=Lus10034686.BGIv1.0 annot-version=v1.0 MGCFGCSRSDSCGFSSFTGLCDSISAFFSSQLIGMERLVHSCTITPIHPSYRRHRSPFDTEFSLRLRKNLMRSCVVTMKQHQRFDLVAASAEPLKSSPLS QFDTSLPSKEVVDLWRSADAVCFDVDSTVCLDEGIDELADFCGAGEAVAEWTARAMGGSVPFEQALAARLSLFKPSLSQLQEFLEKRPPKISPGIDELVK KLKAKTIDVYLISGGFRQMINPVASILGIPVKNIFANQLLFGSSGEFVGFDANEPTSSSGGKATAVEQIRKAHGYKAMVMIGDGATDLEAKKPGGADLFI CYGGVQLREGVAAKADWVVFNFADLMNSLDLSGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10034686 [exp]	0	1
AT3G51390			DHHC-type zinc finger family p...		Lus10028384 [exp]	1.0	0.8893
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	3.0	0.8339
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10015796 [exp]	6.3	0.8205
AT5G11640			Thioredoxin superfamily protei...		Lus10011619 [exp]	6.8	0.8014
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10032550 [exp]	6.9	0.8269
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	7.9	0.8593
AT3G28760			unknown protein		Lus10005250 [exp]	8.7	0.8311
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	9.2	0.8159
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	9.4	0.8240
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10013754 [exp]	12.5	0.8192

Compare expression of checked genes

Lus10034686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.