Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33270 614 / 0 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G33260 597 / 0 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT5G27080 538 / 0 AtCDC20.3 cell division cycle 20.3, Transducin family protein / WD-40 repeat family protein (.1) AT5G26900 534 / 0 AtCDC20.4 cell division cycle 20.4, Transducin family protein / WD-40 repeat family protein (.1) AT5G27570 512 / 0 AtCDC20.5 cell division cycle 20.5, Transducin/WD40 repeat-like superfamily protein (.1) AT5G27945 414 / 2e-142 Transducin/WD40 repeat-like superfamily protein (.1) AT4G22910 313 / 2e-102 CCS52A1, FZR2 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) AT5G13840 308 / 2e-100 FZR3 FIZZY-related 3 (.1.2) AT4G11920 298 / 1e-96 FZR1, CCS52A2 FIZZY-RELATED 1, cell cycle switch protein 52 A2 (.1) AT5G52820 72 / 2e-13 WD-40 repeat family protein / notchless protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037593 [exp] 703 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006851 [exp] 701 / 0 AT4G33270 728 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042748 [exp] 700 / 0 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10006853 [exp] 695 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10042765 [exp] 617 / 0 AT4G33270 542 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10037595 [exp] 350 / 2e-120 AT4G33270 402 / 2e-141 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10043009 [exp] 325 / 3e-107 AT4G33270 344 / 1e-114 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10040282 [exp] 323 / 5e-103 AT5G13840 685 / 0.0 FIZZY-related 3 (.1.2) Lus10024482 [exp] 296 / 3e-95 AT4G22910 733 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118400 [exp] 623 / 0 AT4G33270 771 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 622 / 0 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.013G048900 [exp] 621 / 0 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.016G068700 [exp] 563 / 0 AT4G33270 607 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.015G110300 [exp] 345 / 4e-115 AT4G33270 363 / 5e-122 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.010G202100 [exp] 309 / 7e-101 AT5G13840 707 / 0.0 FIZZY-related 3 (.1.2) Potri.008G057500 [exp] 299 / 1e-96 AT5G13840 705 / 0.0 FIZZY-related 3 (.1.2) Potri.001G112700 [exp] 298 / 3e-96 AT4G22910 705 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.003G119500 [exp] 297 / 7e-96 AT4G22910 702 / 0.0 cell cycle switch protein 52 A1, FIZZY-related 2 (.1) Potri.008G002300 [exp] 74 / 7e-14 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10034687 pacid=23162770 polypeptide=Lus10034687 locus=Lus10034687.g ID=Lus10034687.BGIv1.0 annot-version=v1.0 ATGACAAGAAGTTCTTCCAAGGATAACTTGGATCGCTTTATTCCGAATCGGTCGGCCATGGATATGGATTACGCCCACTGGATGGCGACGGAGGGTTGGA AAGAGCCGGAGAACCCAGTCCTGTGCTCTGCTTCAAGCGAGGCGTACAAGAGACTGTTGGCGGATGCTATGGGCTTGAATCGTACAAGGATTTTGGCGTT CAAGAACAAGCCTCGTTCTACTGCTCCTGTTGAGTTGATTCCGCATCAGCATACTTGTTCAGATTCTTCTCTTCCTCACCGGGGGAAACCAAGCAAGCCA CTGAGACACATTCCTCAGACTTCAGAGAGGACATTGGAAGCTCCTGACATTGTGGATAATATTTACTTCAACGTACTGGATTGGGGCATCAATAATGTTG TGGCGATTGCACTAGGTTGTACAGTTTATCTGTGGGATGCTTCCAATGGCTCTGTTTCCGAGCTTGTCACCGTTGATGAAGAGCTTGGCCCTGTTACTAG CCTTAAGTGGGCTCCGGATGGCTGCCATTTGGCCGTTGGTTTGAGCAACTCCGAAGTCCAATTGTGGAATTATACTTGTAACAAACTGTTACGAACATTG AAAGGCGGCCATAGAGGCCGAGTTGGGTCGATGGATTGGAACCACCACATCCTGACCACTGGAGGAATGAATGGAAGGATCTTAAACACCGATGTCAGGA TCAGGGAACACGTCGTCACGAAATTTCGGGGCCACACGCAAGAACTCTGCGGACTGAAATGGTCGGATTCGGGTCAGCAATTAGCAAGCGGAGGCAACGA CACTCTCGTCCACATCTGGGACATATCCATGGCTTCTTCTTCTTCTTCCACCCCTCGGAGGACTCAGTATCTTCACAGGCTTGAGGAGCATACCGCAGCA GTAAAGGCTCTTGCTTGGTGTCCATTCCAAAGGAACTTGCTCGCTACAGGAGGTAGCACAGAAGATAGGATGGTCAAATTCTGGAACACCAACACGGGTG CTTGCTTGAACTCGGTGGACACGGGCTCTCAGGTCTGTGCATTGCAGTGGAACTCTAACGAGAGGGAACTCTTAAGCTCTCATGGTTTCTCCAGGAATCA GCTTACCTTGTGGAAGTATCCATCCATGAAGAAGATTGCAGAGCTTACCGGCCACACCTCCAGGGTCCTGTTCATGGCTCAGAGTCCAGATGGATGCTCT GTGGCTACTGCAGCAGGGGATGAAACTCTGAGGATCTGGTACGTGTTTGGCGATCCTGCTGCGAAGAAATCCGAAAGGAAAGCGATTCCCGAACCGTTCT CTTGGGCGAATCGGTGCACTATCCGGTGA
AA sequence Show only first row Show all	>Lus10034687 pacid=23162770 polypeptide=Lus10034687 locus=Lus10034687.g ID=Lus10034687.BGIv1.0 annot-version=v1.0 MTRSSSKDNLDRFIPNRSAMDMDYAHWMATEGWKEPENPVLCSASSEAYKRLLADAMGLNRTRILAFKNKPRSTAPVELIPHQHTCSDSSLPHRGKPSKP LRHIPQTSERTLEAPDIVDNIYFNVLDWGINNVVAIALGCTVYLWDASNGSVSELVTVDEELGPVTSLKWAPDGCHLAVGLSNSEVQLWNYTCNKLLRTL KGGHRGRVGSMDWNHHILTTGGMNGRILNTDVRIREHVVTKFRGHTQELCGLKWSDSGQQLASGGNDTLVHIWDISMASSSSSTPRRTQYLHRLEEHTAA VKALAWCPFQRNLLATGGSTEDRMVKFWNTNTGACLNSVDTGSQVCALQWNSNERELLSSHGFSRNQLTLWKYPSMKKIAELTGHTSRVLFMAQSPDGCS VATAAGDETLRIWYVFGDPAAKKSERKAIPEPFSWANRCTIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10034687 [exp]	0	1
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	1.4	0.8398
AT4G34135		UGT73B2	UDP-glucosyltransferase 73B2 (...		Lus10027880 [exp]	2.4	0.8146
AT5G63100			S-adenosyl-L-methionine-depend...		Lus10037637 [exp]	3.7	0.7452
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Lus10009227 [exp]	6.7	0.7899
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10032214 [exp]	12.4	0.7858
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	14.3	0.7898
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10027842 [exp]	15.6	0.7590
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	19.9	0.7784
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	22.2	0.7629
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10001615 [exp]	24.1	0.7274

Compare expression of checked genes

Lus10034687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.