Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74250 431 / 8e-144 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G11450 73 / 2e-13 DnaJ domain ;Myb-like DNA-binding domain (.1) AT1G56300 67 / 5e-13 Chaperone DnaJ-domain superfamily protein (.1) AT5G06110 69 / 4e-12 DnaJ domain ;Myb-like DNA-binding domain (.1.2) AT1G71000 64 / 8e-12 Chaperone DnaJ-domain superfamily protein (.1) AT1G68370 65 / 7e-11 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 65 / 8e-11 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G80030 63 / 3e-10 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT2G33735 57 / 6e-10 Chaperone DnaJ-domain superfamily protein (.1) AT3G08910 61 / 9e-10 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017846 [exp] 810 / 0 AT1G74250 464 / 1e-156 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10022344 [exp] 216 / 3e-65 AT1G74250 204 / 5e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012524 [exp] 165 / 3e-45 AT1G74250 142 / 3e-37 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10026919 [exp] 81 / 1e-15 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020118 [exp] 81 / 2e-15 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020117 [exp] 79 / 3e-15 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026920 [exp] 76 / 4e-14 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020685 [exp] 69 / 2e-13 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10029862 [exp] 69 / 2e-13 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018400 [exp] 474 / 3e-161 AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G190000 [exp] 81 / 1e-15 AT3G11450 663 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.001G035800 [exp] 77 / 1e-14 AT3G11450 679 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.010G113400 [exp] 70 / 1e-13 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G020300 [exp] 67 / 6e-13 AT1G56300 217 / 2e-73 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G010800 [exp] 64 / 1e-11 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G198000 [exp] 65 / 5e-11 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 65 / 5e-11 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 64 / 1e-10 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 64 / 1e-10 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF12171 [flax] [poplar] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10034688 pacid=23162870 polypeptide=Lus10034688 locus=Lus10034688.g ID=Lus10034688.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCGGCTTCGGCGGCGGCGACGAAGCGATGCTACTACGAGGTGCTGGGAATATCGCAGGACTCAAGCCCCGACGAAATAAAGTCCGCTTACA AGAAGCTCGCTCTCCAGCGCCATCCGGACAAGCTCATGCGATCCGGAATAAGCGAAGCCGACGCCACAGCTCAGTTCCAGGAGCTGGTTCACGCGTACGA GGTCCTCTCCGACGCCAAGGAGCGCGCCTGGTACGATACTCACCGCAATCCGATCCTTTTCTCCGACCGTAACTCTGCCAGCTCCGCCCCATCTATCCCC GATTTATCCTCCTTCTTCTCGAACACGGTATACTCTGGCTACACAGATAAGGGGAAAGGATTTTATAAAGTGTATTCGGACGTGTTCAATAAGATTTACG CGAACGAGGTCAGTTTTTGTAAGAGATTTGGGATAGGGTTCGATTATCTGAAGGAGGCGCCGTTGATGGGGAATTCGGAGAGTCCCTACAAGCAGGTGAC TGCTTTTTATGGTTATTGGTTGGGATTTAACTCGATTATGGATTTCTGTTGGGCGGACCAGTACGACGTGATGGCTGGTCCTGACCGGAGGTCTCGGCGG ATGATGGAGGAGGAGAATAAGAAGGTGAGGAAGAAGGCGAAGAGGGAGTTTAACGATACGGTGAGGGGGTTGGCGGAGTTTGTAAAGAAGAGGGATAAGA GAGTGATCGATATGATGGCTAAGAAGATTGCTGAGGCGGAGAAGAAGAAGGAAGTAGAGAGGCAGAGGAAGAAGCAGTTGGAGAGGGAAAAGATGGAGAG GATGATGGCTTACGAGGAGCCGGAGTGGGCTAAAGTGGGTGAAGAAGAAGTTGTTGAGGATTTTGAAGAAGAGAATGGGGAAGAAGGGAAGCAGGAGTTG TATTGTGTGACCTGTAGTAAGAAGTTCAAGAGTGATAAACAGTGGAAGAATCATGAGCAGTCTAAGAAGCACAAGGAGAAGGTTGCACAGTTGCGAAAGT CGTTTAAGAAAGAACAGTATGTTGAAGAAGAGGATGAAGAAGAGTTTGTTGAGATTGAGGAGGAGGAGACAAGTGAGGAAAGAAACTGCAGTGTAGATGA TGATTTGGAGGAGAAGTTTGAGAAAGGGGTTACAGTTAGCGAGGAGGAGGAAGATAATGGGGTTGAGAATCTGGGTGGTGAAGATGAGGATGATCTCTTT TTTGATGCCGACGATTCTAATGAAGTTGAAGAGGACAATGAGAATGCTAAGGATGATGGCTTCCCTGATGCCAATGATTCCAATGAAGCAGTAAAAGCTA ATGAGAGTGATACTAAGGATGCTGTTTCTGATGATGATGATGATCTTGATGATGGAAGGAGTGTCCTTGAAGCAATGCTGTCAGGACGCAGAGGCAAGAA AAACAGAAGTTCTAAGGATGTATATCCGGAAGATGTTAATGAGGGTGCCAATGCTATGGATCATGGCAATCGGAAGAGTAAGAGGAGAGCGAAGAAAGAA AAGGGAAAGAGCAATGTCGAAGAACCAGTAAGGGATTTTGCCAACGGAAGTAAGAGTATGAAGGAGGAGAAAAATGTGGGCACTGAAGACCAAACAGATG AGTCATGTACGGATGACAATGTCGATGACATTAAAAAGGATGATCCTTTGGTGAAGAACCGCAAGAGTTCTAGTCAGGGTGTGACGAAAAAAGGAACAAA TTCAAAGGCCGCCCCGTCCAAAGGGAAGAAAGGAAAGGGAACATCGAACAAGAGTGCTGCCAACTCATGCGAGGCGTGCGGAGAGGAATTCGAATCGCGG AACAAGTTACATATGCACTTGGGGGAGACGGGGCATGCTTCATTGAAACGTCGATGA
AA sequence Show only first row Show all	>Lus10034688 pacid=23162870 polypeptide=Lus10034688 locus=Lus10034688.g ID=Lus10034688.BGIv1.0 annot-version=v1.0 MASSASAAATKRCYYEVLGISQDSSPDEIKSAYKKLALQRHPDKLMRSGISEADATAQFQELVHAYEVLSDAKERAWYDTHRNPILFSDRNSASSAPSIP DLSSFFSNTVYSGYTDKGKGFYKVYSDVFNKIYANEVSFCKRFGIGFDYLKEAPLMGNSESPYKQVTAFYGYWLGFNSIMDFCWADQYDVMAGPDRRSRR MMEEENKKVRKKAKREFNDTVRGLAEFVKKRDKRVIDMMAKKIAEAEKKKEVERQRKKQLEREKMERMMAYEEPEWAKVGEEEVVEDFEEENGEEGKQEL YCVTCSKKFKSDKQWKNHEQSKKHKEKVAQLRKSFKKEQYVEEEDEEEFVEIEEEETSEERNCSVDDDLEEKFEKGVTVSEEEEDNGVENLGGEDEDDLF FDADDSNEVEEDNENAKDDGFPDANDSNEAVKANESDTKDAVSDDDDDLDDGRSVLEAMLSGRRGKKNRSSKDVYPEDVNEGANAMDHGNRKSKRRAKKE KGKSNVEEPVRDFANGSKSMKEEKNVGTEDQTDESCTDDNVDDIKKDDPLVKNRKSSSQGVTKKGTNSKAAPSKGKKGKGTSNKSAANSCEACGEEFESR NKLHMHLGETGHASLKRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	0	1
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	1.7	0.9169
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Lus10020953 [exp]	2.4	0.8902
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	2.8	0.9093
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	2.8	0.8971
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	3.9	0.8939
AT5G43490			unknown protein		Lus10002352 [exp]	5.2	0.8685
					Lus10031351 [exp]	6.3	0.8674
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10023248 [exp]	6.5	0.8814
AT5G53800			unknown protein		Lus10014800 [exp]	6.9	0.9029
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	10.8	0.8630

Compare expression of checked genes

Lus10034688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.