Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61060 841 / 0 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 491 / 2e-165 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT5G61050 284 / 3e-91 histone deacetylase-related / HD-related (.1) AT3G18520 249 / 3e-74 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT4G33470 152 / 5e-40 HDA14, ATHDA14 histone deacetylase 14 (.1) AT1G08460 146 / 3e-38 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT4G38130 108 / 1e-24 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 104 / 2e-23 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT3G44680 90 / 6e-19 HDA09, HDA9 histone deacetylase 9 (.1) AT5G35600 77 / 7e-15 HDA7 histone deacetylase7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017845 [exp] 1218 / 0 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 232 / 4e-68 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10022906 [exp] 232 / 2e-67 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10010889 [exp] 160 / 8e-43 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10001850 [exp] 142 / 1e-36 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10013343 [exp] 142 / 1e-36 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10019486 [exp] 106 / 4e-24 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10043337 [exp] 105 / 5e-24 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001605 [exp] 107 / 1e-23 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092900 [exp] 939 / 0 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 232 / 2e-67 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.005G064200 [exp] 153 / 1e-40 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.009G020500 [exp] 138 / 2e-35 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.004G209800 [exp] 103 / 5e-23 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 103 / 6e-23 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.012G083800 [exp] 100 / 2e-22 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.015G082500 [exp] 99 / 1e-21 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 88 / 3e-18 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.006G230300 [exp] 83 / 1e-16 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10034689 pacid=23162721 polypeptide=Lus10034689 locus=Lus10034689.g ID=Lus10034689.BGIv1.0 annot-version=v1.0 ATGGGAGATGTGACGGACTCTGACTTTAGCAAGAAGAGCAGCAGTCAAAGCCGAGTAGGGCTTCTGTATGACGAGCGGATGTGTAATCATTGCACTCCTG ATGGCGAAGATCATCCTGAAAATCCCAGCCGAATTAGGTCTATCTGGAGCAAGCTCCAAGCCAAGGGTATCCCCCAAAGGTGTGTCCGTCTGGACGCCAA AATGGCAGAAGACAAACATTTACTTGCTGTTCATTCCCAGAGACATGTTGATTTGATTAAAAACATCAGCTCCAAAACCTTCTACTCGAGGAACAGGCTA GCTGCGAGGCTGAATTCCATATATTTCAACGAGGGGTCATCTGAAGCTGCTTACTTGGCTGCTGGTTCTGTTGTAGAGGTTGCTGAGAAAGTTGCCAAAG GAGAGGTGGATTCTGCCGCTGCTATTGTTAGGCCACCTGGCCATCATGCCGAACATGATGAAGCAATGGGATTTTGTCATTTCAATAATGTTGCAGTTGC AGCCAGCTTTCTTTTGGATGAAAAGCCAGAATTGGGCATCAAAAAGATTTTGATTGTTGACTGGGATGTGCATCATGGAAACGGTACTCAGAAGATGTTT TGGTCAGATTCCCGAGTCCTGTTCTTCTCCGTTCACAGGCATGAGTTTGGTTCATTTTACCCAGCCAATGACGATGGCTTCTACACTAATGTGGGTGAAG GTGCAGGTGAAGGGTATAATATAAATGTTCCCTGGGAGAACGGAAGATGTGGAGATTCAGACTATCTTGCTGTTTGGGACCATGTATTGGTCCCCGTCGC AAAGGAATTTGATCCTGACATTATTATAGTGTCCGCAGGATTTGACGCAGCTGCTGGAGACCCTTTAGGTGGTTGCCGCCTCACACCTTACGGATATTCA GTAATGCTGGAAAAGCTGATGGATTTTTCTAATGGAAAAGTAGTCTTGGCATTTGAAGGGGGCTACAATCTTGATTCTATAGCAAGTTCATTCCTTGCTT GCATGGAGGTGTTACTCGAACGTAAGCGCATTGAAGGATCTTCAGAGGCCTATCCATTTGAATCTACTTGGCGTGTAATAGACGAGGTAACCTGTATTTC CATAGCATCTTCTTGCATGCTATGTTTGGAGAAAGCAATTGTTGGGTTTGCTGATGGAGTGTATGGCATTGTCCAGGTTCGCAAGAAATTGTCTGTTTAC TGGCCTGTGCTTGCAGATGAATTACCATCAACGTTAACAAGCAAAAAAGCTCCATCTCCACATCTTTTTGTCTCAAGCTCTGACTCTGAAGCTGAGGATG AAAACACATCTGTATCAGAAAAAATCGAGGCGGCTCTTCAGGAAGTTATGGAACCATTTTCGAAGCTGACAGTTGAAGATCATCCAGATGGGACTGCATC TTGTGCCCCATGGAGGCCAGTTCTTTCCAAGACTGATATTTGGTATGCTACATTTGGATCAAACATGTGGCAGTCGAGATTTCGATGTTATATTGAAGGC GGCCGGGTCGAAGGGATGCAGAAGCCATGTGCTGGTTCATCGGATAAACAGCCACCGAAAGATATCATTTGGACAACATTCCCCCACAGATTATTCTTCG GTCACGAGTCTACGAGGACATGGGGACCAGGAGGAGTTGCTTTCCTTCATCCAGAAAGTAGCAGTGATGAAAAAACACACATGTGCCTATATAGAATCAC GCTAGAGCAATTCAATGATGTTCTGCTTCAGGAAAATGCCTCCAGTTACGACATGAGCTCTCCTGTGTTCGATTTAACTGATTTGAGTACTGCAGAGAAC CAAGGATCAATCCCTCTGGAGGTTTACAAGAATGGTTGGTACCATAATGTGGTTTACTTGGGGAAGGAACACGGTCTTCCGATTCTGACCATGACGTGCA CAGTGTCGGATGTGGAGAAGTTTCGAGGTGGGGATTTCCCTTTGCGAGCTCCATGCAAAGAGTATGCTAACACCTTAGTAAGGGGACTGGTTGAAGGAGG ACAGTTATCTGAAGAGGAAGCCAATGCTTACATAGAAAAAGCTTCTGGAAAGCCAATCTGA
AA sequence Show only first row Show all	>Lus10034689 pacid=23162721 polypeptide=Lus10034689 locus=Lus10034689.g ID=Lus10034689.BGIv1.0 annot-version=v1.0 MGDVTDSDFSKKSSSQSRVGLLYDERMCNHCTPDGEDHPENPSRIRSIWSKLQAKGIPQRCVRLDAKMAEDKHLLAVHSQRHVDLIKNISSKTFYSRNRL AARLNSIYFNEGSSEAAYLAAGSVVEVAEKVAKGEVDSAAAIVRPPGHHAEHDEAMGFCHFNNVAVAASFLLDEKPELGIKKILIVDWDVHHGNGTQKMF WSDSRVLFFSVHRHEFGSFYPANDDGFYTNVGEGAGEGYNINVPWENGRCGDSDYLAVWDHVLVPVAKEFDPDIIIVSAGFDAAAGDPLGGCRLTPYGYS VMLEKLMDFSNGKVVLAFEGGYNLDSIASSFLACMEVLLERKRIEGSSEAYPFESTWRVIDEVTCISIASSCMLCLEKAIVGFADGVYGIVQVRKKLSVY WPVLADELPSTLTSKKAPSPHLFVSSSDSEAEDENTSVSEKIEAALQEVMEPFSKLTVEDHPDGTASCAPWRPVLSKTDIWYATFGSNMWQSRFRCYIEG GRVEGMQKPCAGSSDKQPPKDIIWTTFPHRLFFGHESTRTWGPGGVAFLHPESSSDEKTHMCLYRITLEQFNDVLLQENASSYDMSSPVFDLTDLSTAEN QGSIPLEVYKNGWYHNVVYLGKEHGLPILTMTCTVSDVEKFRGGDFPLRAPCKEYANTLVRGLVEGGQLSEEEANAYIEKASGKPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	0	1
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	1.0	0.9225
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	2.4	0.8738
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	3.5	0.8967
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	3.7	0.8600
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	4.9	0.8865
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	5.3	0.8822
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	5.7	0.8676
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	6.6	0.8617
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	7.4	0.8752
AT4G25550			Cleavage/polyadenylation speci...		Lus10038867 [exp]	7.4	0.8184

Compare expression of checked genes

Lus10034689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.