Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 140 / 3e-41 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT5G61130 127 / 4e-36 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT5G08000 121 / 6e-34 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT4G13600 104 / 5e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G03505 103 / 5e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 100 / 1e-25 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT1G79480 99 / 6e-24 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G26450 94 / 2e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G13830 93 / 6e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G01630 96 / 3e-22 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021619 [exp] 238 / 2e-78 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 184 / 5e-58 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 183 / 9e-58 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10026662 [exp] 127 / 2e-35 AT1G18650 145 / 2e-43 plasmodesmata callose-binding protein 3 (.1) Lus10037071 [exp] 125 / 7e-35 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10004650 [exp] 124 / 1e-34 AT1G18650 141 / 4e-42 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 124 / 2e-34 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 111 / 6e-30 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10003803 [exp] 105 / 2e-25 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065750 [exp] 161 / 3e-49 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 154 / 2e-46 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.008G095300 [exp] 126 / 5e-36 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1) Potri.010G158900 [exp] 125 / 2e-35 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 115 / 2e-31 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 108 / 1e-28 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.006G008200 [exp] 101 / 1e-25 AT1G79480 142 / 8e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.008G082900 [exp] 103 / 2e-25 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.010G173500 [exp] 100 / 2e-24 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.004G153800 [exp] 100 / 9e-24 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10034690 pacid=23162863 polypeptide=Lus10034690 locus=Lus10034690.g ID=Lus10034690.BGIv1.0 annot-version=v1.0 ATGGCGGAAAATCCACCGAATTACGATGCTTTGGCTATAGAGGCTCACACCCCCACCACTATTTCCTCTTTCTATGGCCATATACTGAATCCCAAATCCC ATCTCTTTCCCAACTCCTCTACTCAACTTCCTTTGATTCCACGTCCCATTATTGCTTGCTGCCATTCAAAAATGGCCCTCTTACTCCTCATTGGAATGCT AATGGCCATGACAGGCCACGCCACATGTACATGGTGCGTGTGCAAGGACATGCCAGATGCGGTGCTACAGAAGGCTCTGGACTATGCTTGTGGAGCTGGA GCGGACTGCAACCCGACCCGCCAAAACGGGCAGTGTTTCCAACCTAACACAGTGAGAGCTCACTGCTCTTACGCTGTCAATAGCTATTACCAGAAGAAAG GCCAATCTCAAGGCTCTTGTGATTTCTCTGGCGCTGCTACCATCTCCACCTCTGACCCCAGTGTTACCGGCTGCTCTTACCCTGCTACTGCCAGTGGATC AAACACAGCATCACAAGGGACAACCAGCAGCCCAAAAACAGGAGGTACCAGTACCACAACCACATCAGTCCCAAACAGCAGCAACAACCCATACTCTTCT TCTAATGGATCAGGAGGGGTTGGAGGAACCGGAACCGGAACCGGGAATGGATTGGGTTCATCAGGACCCGGTGGGTACACAGACTTGAATGACTCTGCTG CATCTGCTGCATTGTTCACTCCATCACTTACTACTGCTGCAGCTGTTTCTTTCTTCTTACTGGGAAGTCTACTGTTGAAGGGTGAATTGTAA
AA sequence Show only first row Show all	>Lus10034690 pacid=23162863 polypeptide=Lus10034690 locus=Lus10034690.g ID=Lus10034690.BGIv1.0 annot-version=v1.0 MAENPPNYDALAIEAHTPTTISSFYGHILNPKSHLFPNSSTQLPLIPRPIIACCHSKMALLLLIGMLMAMTGHATCTWCVCKDMPDAVLQKALDYACGAG ADCNPTRQNGQCFQPNTVRAHCSYAVNSYYQKKGQSQGSCDFSGAATISTSDPSVTGCSYPATASGSNTASQGTTSSPKTGGTSTTTTSVPNSSNNPYSS SNGSGGVGGTGTGTGNGLGSSGPGGYTDLNDSAASAALFTPSLTTAAAVSFFLLGSLLLKGEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	1.0	0.9663
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	2.0	0.9490
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	2.8	0.9143
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	3.2	0.9130
AT2G14660			unknown protein		Lus10033766 [exp]	4.0	0.9084
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	4.2	0.9268
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	6.5	0.8903
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	6.9	0.8953
AT1G31335			unknown protein		Lus10038328 [exp]	13.0	0.9029
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	13.0	0.8994

Compare expression of checked genes

Lus10034690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.