Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 59 / 8e-11 dentin sialophosphoprotein-related (.1) AT5G07970 55 / 2e-09 dentin sialophosphoprotein-related (.1) AT5G07940 55 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021621 [exp] 184 / 2e-54 AT5G07940 265 / 4e-72 unknown protein Lus10040531 [exp] 70 / 1e-15 AT5G07980 109 / 4e-28 dentin sialophosphoprotein-related (.1) Lus10040532 [exp] 50 / 1e-07 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1) Lus10021162 [exp] 48 / 7e-07 AT5G07940 270 / 4e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061400 [exp] 83 / 3e-19 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1) Potri.015G056400 [exp] 67 / 1e-13 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.015G056200 [exp] 43 / 2e-05 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1) Potri.012G066600 [exp] 40 / 0.0002 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034692 pacid=23162772 polypeptide=Lus10034692 locus=Lus10034692.g ID=Lus10034692.BGIv1.0 annot-version=v1.0 ATGCAACATGAGATGAGGTATGGACAATCAATTCAAAGAACGGAACATGGTAGAAGTCAATCCCAAGGGCAGCAGCCTGCTATAAATGGCTACTTCCAAG GTCATCAGGTTTTCCAGACGCGTCAGACTGCAGCCGACAATCTAACAGAAAAGGGGTTTTCTATGTTTGGATCTCACCAAGGAAATCCATTACAGATCAA GTCTTCTGAATCACCAGTTAATTTTGATTTTTTTGGAGGTCAGAACCAGATGAACTCCCATAATCCTGAAGTTATGCAATCTCTCTCACGACCATCCTCG GGGACTGGTGATATTATGCTACAGCAACAATTGATACTCAAGAAAATGCAAGAATTTCAGAGGCAGCGCCACCTTCCGATGCAACAACAGCAGCAGCTGC AAGACTCGAGACATCTGAATAGTTAG
AA sequence Show only first row Show all	>Lus10034692 pacid=23162772 polypeptide=Lus10034692 locus=Lus10034692.g ID=Lus10034692.BGIv1.0 annot-version=v1.0 MQHEMRYGQSIQRTEHGRSQSQGQQPAINGYFQGHQVFQTRQTAADNLTEKGFSMFGSHQGNPLQIKSSESPVNFDFFGGQNQMNSHNPEVMQSLSRPSS GTGDIMLQQQLILKKMQEFQRQRHLPMQQQQQLQDSRHLNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	0	1
					Lus10007128 [exp]	1.7	0.9068
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	1.7	0.9426
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	4.0	0.8427
AT2G17650			AMP-dependent synthetase and l...		Lus10041825 [exp]	4.0	0.9092
AT3G20395			RING/U-box superfamily protein...		Lus10021524 [exp]	4.5	0.9037
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	4.9	0.8841
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004919 [exp]	6.5	0.8922
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	6.5	0.8327
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	7.3	0.8828
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024833 [exp]	8.5	0.8408

Compare expression of checked genes

Lus10034692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.