Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07940 123 / 3e-28 unknown protein AT5G07980 122 / 7e-28 dentin sialophosphoprotein-related (.1) AT5G07970 105 / 6e-23 dentin sialophosphoprotein-related (.1) AT3G29385 68 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021621 [exp] 1536 / 0 AT5G07940 265 / 4e-72 unknown protein Lus10021162 [exp] 359 / 6e-105 AT5G07940 270 / 4e-73 unknown protein Lus10040532 [exp] 332 / 7e-97 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056400 [exp] 257 / 9e-71 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.012G066600 [exp] 236 / 8e-64 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1) Potri.012G061400 [exp] 229 / 1e-61 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1) Potri.015G056200 [exp] 226 / 1e-60 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034693 pacid=23162897 polypeptide=Lus10034693 locus=Lus10034693.g ID=Lus10034693.BGIv1.0 annot-version=v1.0 ATGTCTGGAGACATGCAGCGATCTTCTACTGGGTCTGAATATCACCCGGAGCAAAACCAGGCACTTCAATTGATGGGCATGGTTCCTCATAAGGCTGATC AATCTCTTTATGGTGTCCCTATTTCTGGAACAGGAGTTAATTCAACTCAATTTTCAGACATTCAAATGGATAAGGCCCCTGGCCAGCAAATGTCAAGCAA TAGTTCCTTTCCAGCTAATCCGTATAGTGGGTTGTCAAACCATTTGAATGTTCAGGATGGAACTCTGGTTTTGAGACAAGGATATCAAGTGAGAAATGAG ACAGGAAGAACAAATATTGGAGGATTTGACAGTGGAATTAATTTTAAACATCTCCAGCAACTGAATGAAAGTAGTGGTCCAGCCGAGGAATATCATCGTA CCAGGGAGCAAGGAATTCCATCAGAATCATCTCATGAGATGGCAGACATTCAGGTGTCTTCTCAAAATGCTGCCAAGTTAGAACCAACCGAAGAGATGAT TTTATATGGGTCAGATGATAATCTGTGGGATGCATTCAGTAGTAATAATCATGTTGGTTCAGGAGGTTTTAATGCAAACGAGGGCACTGACACGTTGGAT GGTGCTTTTCCTTCTTTGCGAAATGGAGCGTGGAGTGCTCTTATGCAGTCTGCTGTGGCAGAAACTTCTAGTGTGGATATGAAAACACAAGAGGAATCGA GTGGTCCAAGTGGCCAGGCTGCTGAACCTCGTACTGGAGCTAGACACTTCTCGTCTGTAAATGATGCTGGAAAGCAAAAAACAGCTTGGGTGGGTAATAG TTCTCAAACTGTATCAACCATAAATAATACCTTCAATTGCTCTGGTGACAATGATACCAGCAAGAACAGTAATGCGATGCAAAGATTTGCTTGTTCTGAC ATTAGCTCTTCACATGATGTGAGTGACAGGTTTCATGTGGATTCTTTTCGGAAATATTCGCTGCAGTTTGAAAACAGTAATAACAAATTGCTTGATGACA GCCATCAACAAAAAGATGTTGCAGGAAGCCATAAACATGAAAATATTGTCCATAGTTCCCATGGTGATCCAAGTGCAAAGAGTGATTCACATCCTTTGAC CAATCAGTCGGACTTTTCCATGCACAATCCAAGAGGTGAGAAATTCATTGGACAAACGAATCGGGGGAGAACTTCAGGTCCGTTTACCCATGGTTTTCCC TATAAAAGAACTCGTACTCAAGACTTGGACACACAAGAAATTGGCGGGGAGGCATCTATCAATCGATCTGCGAACGATGCATTTGATAATTTTGTCTTCC AGATGAAGCAGACAAATGAGACTGTTGATGGAGCTCAATCAAGTCAATCAGGACAGACACTTCCAGGGGAACAGCATTTTGTGATGTTGCTTCTTCTGCC GAGGTTTCCCGCCTTAATAACTACCAAAATGATAAGGATTCTGGTCAGCATTTTCCTGTGCTGGAACAAACATCTACATCCCAGTCTTATGCAGTGTCCG CTTTGCAGCAGGATGAGTTTTCAAGAATGTATTCAACTATGCGAACCAGTACTTCAAGTAAACTCCCTCCATTTGAGCCTCGTCAATGTGCCTGAGTCCG ATATTCAATCAAACAGCATTTCCAAAACCACTTCTTGGCCACAGAAACCAGTATACCAATATCCACAAGCAAGTGGAAGTGATCCTTCTGCAACTGGTGC CACTTCTGTCAAAATTGGATTGACTGGGAAAGGACAGCTGCAAAAAGATCAAAAGAGCCAACTGATTAACCCTGTAAATGACTTCTCCCAGAAGGTTATG AGTCCCTTGCAAGGAAATGACTTGATTATAAATCGAGCGAGTAGCACTCAAATGAATATTGCAGCTTTTAGGCGCTCACCTAGTGCATCTTTGAATCAAA ACTACTCATTGCTGCATCAAGTTGAGGATATGAAGAATCCAGAGATAGATCCAAATGTTCGGAGTTTGAAGAGATTGAAGGCTTCTGATGGTTTGGTTAA CCCTCAGTTAGCAACTTCTGGGAGTCGGCAACAGTTAGCAACTCCTTCATTGAATAATGCCCGCAGTTCCCCTGATAACCCAAACCAGGGTCCAAATCTA CCTTCTCATGATATGCAGGAGTTTGGTGGGAACAATTCTGGAAATTTCACAGATACCAACATGTTGGCTTCTAGTAGAGATGAACCTTCCAAGATTAGCC ACCAGATGGCTCCATCATGGTTTAGTCAGTATGGCAGATTAAAAAATGGACAGGTCGTCTTATCCACATACGATGCTGAAAAGTTCCTGCTACGAAGCAT CCATAATCAGCTGTTGGTGGGGGCAGGTGGAAGATACACTGGAATTATACTTATTGACGACACAGCTTATGCAGTTATTGCTGCAGCATGGGTTATGTGT GCAGATGCAGTTGCACATTATGAGAGTGCTGGTCATTTTGTCGCCCGGTTGACACTAGGAGATGTGTGTGGTTCGCTCTCTGGCTCTGCAAGTGACACTT CTCCACCTTCCAATAGTGAGAAAACGCTGCCCGAGAGCGGCAGAATGTCTAAAAGTGCAAGTGATCAACACTTCTTGAAAGTCGTGGAAGATCTCATCAG CAGAACAAGGAAAGTTGAAACTGACTTGCCGAGGTTGGATAAGAGCTTGTCTGTCCTAGATTTGAGAGTGGAATGTGAAGATTTAGAGAGATTCTCTGTG ATTAATCGGTTTCCGAAGTTCCATAGTCCAGGCCAAACAGCTGGAAGAGCAGATACTTCATCCTCGGGGAGTGCTGCTAATGTACAGATGTACTTTCTCC AGAGATATGTTACTGCAGTCACCTTCCCTAGGAACATCCCAGACAGGGTACTGTGTCTTTCTCTTTGA
AA sequence Show only first row Show all	>Lus10034693 pacid=23162897 polypeptide=Lus10034693 locus=Lus10034693.g ID=Lus10034693.BGIv1.0 annot-version=v1.0 MSGDMQRSSTGSEYHPEQNQALQLMGMVPHKADQSLYGVPISGTGVNSTQFSDIQMDKAPGQQMSSNSSFPANPYSGLSNHLNVQDGTLVLRQGYQVRNE TGRTNIGGFDSGINFKHLQQLNESSGPAEEYHRTREQGIPSESSHEMADIQVSSQNAAKLEPTEEMILYGSDDNLWDAFSSNNHVGSGGFNANEGTDTLD GAFPSLRNGAWSALMQSAVAETSSVDMKTQEESSGPSGQAAEPRTGARHFSSVNDAGKQKTAWVGNSSQTVSTINNTFNCSGDNDTSKNSNAMQRFACSD ISSSHDVSDRFHVDSFRKYSLQFENSNNKLLDDSHQQKDVAGSHKHENIVHSSHGDPSAKSDSHPLTNQSDFSMHNPRGEKFIGQTNRGRTSGPFTHGFP YKRTRTQDLDTQEIGGEASINRSANDAFDNFVFQMKQTNETVDGAQSSQSGQTLPGEQHFVMLLLLPRFPALITTKMIRILVSIFLCWNKHLHPSLMQCP LCSRMSFQECIQLCEPVLQVNSLHLSLVNVPESDIQSNSISKTTSWPQKPVYQYPQASGSDPSATGATSVKIGLTGKGQLQKDQKSQLINPVNDFSQKVM SPLQGNDLIINRASSTQMNIAAFRRSPSASLNQNYSLLHQVEDMKNPEIDPNVRSLKRLKASDGLVNPQLATSGSRQQLATPSLNNARSSPDNPNQGPNL PSHDMQEFGGNNSGNFTDTNMLASSRDEPSKISHQMAPSWFSQYGRLKNGQVVLSTYDAEKFLLRSIHNQLLVGAGGRYTGIILIDDTAYAVIAAAWVMC ADAVAHYESAGHFVARLTLGDVCGSLSGSASDTSPPSNSEKTLPESGRMSKSASDQHFLKVVEDLISRTRKVETDLPRLDKSLSVLDLRVECEDLERFSV INRFPKFHSPGQTAGRADTSSSGSAANVQMYFLQRYVTAVTFPRNIPDRVLCLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07940			unknown protein		Lus10034693 [exp]	0	1
					Lus10004492 [exp]	5.5	0.7722
AT4G28760			Protein of unknown function (D...		Lus10022843 [exp]	7.7	0.8249
AT3G49990			unknown protein		Lus10015447 [exp]	8.2	0.8180
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	9.4	0.8198
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10025942 [exp]	13.3	0.7947
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10014891 [exp]	17.0	0.7966
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10026968 [exp]	18.7	0.8116
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Lus10015460 [exp]	21.4	0.7835
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	23.5	0.7995
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	23.9	0.7955

Compare expression of checked genes

Lus10034693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.