Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07950 266 / 3e-88 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021622 [exp] 543 / 0 AT5G07950 305 / 1e-103 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051500 [exp] 332 / 2e-114 AT5G07950 276 / 1e-92 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034694 pacid=23162895 polypeptide=Lus10034694 locus=Lus10034694.g ID=Lus10034694.BGIv1.0 annot-version=v1.0 ATGGAAACTCCGTTACGCAGTACATCGTCTACTTCTCATCAAAGCCCTAACGTCGCCACCGCCTCGCCGCTGCCGCCACCGTCATCGATCACGCGGCTAT GGAGGCCTTCCGCTCAGCGGAATCTGAGGAACCAGTGGTCGAAGTTGGCTCAGCTCCGTTCAGAATGGACGTCGTCTTCTTCCGCCGGAAGATCTCACGC CACCTCCCTCGTCAACGCGCATCTCTCCCAAAAGTACCTGCCGATGATGGAGCTCGGGGTTCTGAGTGACATGCCAAGTGTTCGAGAGAAAGCCTCTTCC AAGTTGTTGAAACAGCAGGAGCTTCATCGAGCTAAACTTCTGTCTTCGTACAAATCTCTGTTGGGTGTAGTAACTCAAATGGTGGCCGTCAGTAAATCCA TGAGGCTCTATTTGAATAGAGCAGGCAGTGGCGGTAGTTCAATTGTGCAGTTTTCTGCCATCAGCATGGACGATAATGACAATGGCGATGGTGGGGGGAT CCCGGTGTTCACATTTTGGTCTATCTCGCTTTTCGAGCAGTTGGCAGATGAGCTTGTCCAGATGTTTGTATATGAACTGACTATGAAGCGGCTGATTGTG GTGGAGCTACTTAAAATCAGTAGTGAAGTTGCAAAAGAGAAGGAGATATGCTGGTCAAATGAGCTTTACATCGGAGAATTCGATGAGCTGAGGCAATGCA ACCTGTACTCCAAGGAAATTGATCAACCAATTCACCCAAGATTGATGGAGGTTAAATCTAACATCAACACTGAGTCCATCAAATTCGTAGGTCAACCTAA CTCGGAGACATTGCAGGTCTATTTGACAACATGGCTTTGCGAGGTTAACATAGATACCCAGAGGGTTGACGAAATTCTTGCGATGATTGGAGAGGAAATG CATGTCAACCTTTCATGA
AA sequence Show only first row Show all	>Lus10034694 pacid=23162895 polypeptide=Lus10034694 locus=Lus10034694.g ID=Lus10034694.BGIv1.0 annot-version=v1.0 METPLRSTSSTSHQSPNVATASPLPPPSSITRLWRPSAQRNLRNQWSKLAQLRSEWTSSSSAGRSHATSLVNAHLSQKYLPMMELGVLSDMPSVREKASS KLLKQQELHRAKLLSSYKSLLGVVTQMVAVSKSMRLYLNRAGSGGSSIVQFSAISMDDNDNGDGGGIPVFTFWSISLFEQLADELVQMFVYELTMKRLIV VELLKISSEVAKEKEICWSNELYIGEFDELRQCNLYSKEIDQPIHPRLMEVKSNINTESIKFVGQPNSETLQVYLTTWLCEVNIDTQRVDEILAMIGEEM HVNLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07950			unknown protein		Lus10034694 [exp]	0	1
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	5.2	0.9114
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10041295 [exp]	8.1	0.9018
AT3G23100		XRCC4	homolog of human DNA ligase iv...		Lus10021220 [exp]	12.1	0.8680
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018403 [exp]	13.0	0.8802
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Lus10022332 [exp]	13.9	0.8768
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	14.8	0.8971
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	18.2	0.8907
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	20.5	0.8685
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	22.3	0.8871
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	25.8	0.8941

Compare expression of checked genes

Lus10034694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.