Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39510 318 / 6e-110 ZIG1, SGR4, ATVTI1A, ATVTI11, ZIG, VTI11 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) AT1G26670 257 / 5e-86 VTI1B, ATVTI12, VTI12 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) AT3G29100 239 / 4e-79 ATVTI13, VTI13 vesicle transport V-snare 13 (.1.2) AT5G39630 174 / 9e-54 Vesicle transport v-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021624 [exp] 399 / 9e-142 AT5G39510 326 / 2e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10026134 [exp] 259 / 3e-87 AT5G39510 255 / 3e-87 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10037141 [exp] 245 / 4e-81 AT1G26670 324 / 1e-113 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10036788 [exp] 206 / 1e-65 AT1G26670 243 / 3e-81 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10000565 [exp] 182 / 2e-56 AT5G39510 178 / 3e-56 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10021629 [exp] 81 / 7e-17 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G087700 [exp] 327 / 1e-113 AT5G39510 321 / 1e-112 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.004G115700 [exp] 326 / 4e-113 AT5G39510 325 / 5e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.010G164300 [exp] 275 / 7e-93 AT1G26670 324 / 9e-114 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.008G091000 [exp] 273 / 4e-92 AT1G26670 327 / 5e-115 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus CL0147 [flax] [poplar] Traffic PF05008 [flax] [poplar] V-SNARE Vesicle transport v-SNARE protein N-terminus
Representative CDS sequence Show only first row Show all	>Lus10034696 pacid=23162894 polypeptide=Lus10034696 locus=Lus10034696.g ID=Lus10034696.BGIv1.0 annot-version=v1.0 ATGAGCGGGGTATTTGAAGGATACGAGCGGCAGTACTGTGAGCTTTCTGCAAATCTTTCCAAGAGATGCAATTCAGCGTCTGCACTTGATGGAGAGCAAA AGAAGCAAAAACTTGGTGAAATAAAAGCCGGGTTGGAAGATGCGGAGTCTCTGATTCGCAAAATGGACCTTGAGGCAAGAAGTTTGCCCCCAAATGTCAA GGCTGTGCTCCTGGCGAAGCTAAGAGAATACAAGTCTGATCTCAATAATCTGAAAAGTGAAGTAAAAAGGATAGCATCCGGTAACCTCAATGCTGCTGCC AGAGATGAACTTCTAGAATCAGGCTTCTCCGATGCACTGACGGGTTCAGCTGACCACAGGTCAAGGTTAATGACCTCAACAGCGAGATTGAACAAGACCG ATGAGAGAATCAAGGACAGTAGGAGAACAATGCTGGAAACAGAAGAGCTTGGTGTTTCACTTCTTCAAGATTTGCATCAGCAACGACAGTCCCTTTTGCG TGGCCATGACACGCTTCATGGAGTGGATGATAATGTTGGGAGGAGCAAGCGAGTGTTGGGTAACATGAGTAGAAGGATGAACAGAAACAAATGGGTCATT GGTTCGGTCGTCGCTGTCCTACTTGTTGCCATCGCCGTGATCCTATCATACCAGTTCAGTCTGGTCATCTCGATGTCATGTCACGTTCCATATGAGACCA GACATCTCTCAAGTCTCAACTCCCTCATCTGTCTTCCAAAATCTCCTTCACACTTCAAAGCTTCAACCTTCCTCTTCACTTCGTCTAGGGTCGCAATTCC ATTCAGTTCTAGACCTTGCATTAGGAATGGTGCAAGAAGAAAAATGGGTCCGCAGCTTTCACCGGAAGTTATGGAACTGGCAGTCGAGGTTGTGATCTCC ATAGCTTTGCAGCCGTGA
AA sequence Show only first row Show all	>Lus10034696 pacid=23162894 polypeptide=Lus10034696 locus=Lus10034696.g ID=Lus10034696.BGIv1.0 annot-version=v1.0 MSGVFEGYERQYCELSANLSKRCNSASALDGEQKKQKLGEIKAGLEDAESLIRKMDLEARSLPPNVKAVLLAKLREYKSDLNNLKSEVKRIASGNLNAAA RDELLESGFSDALTGSADHRSRLMTSTARLNKTDERIKDSRRTMLETEELGVSLLQDLHQQRQSLLRGHDTLHGVDDNVGRSKRVLGNMSRRMNRNKWVI GSVVAVLLVAIAVILSYQFSLVISMSCHVPYETRHLSSLNSLICLPKSPSHFKASTFLFTSSRVAIPFSSRPCIRNGARRKMGPQLSPEVMELAVEVVIS IALQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	0	1
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	1.4	0.9639
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	1.7	0.9624
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10035966 [exp]	2.0	0.9610
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	2.0	0.9668
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	2.2	0.9609
AT1G04555			unknown protein		Lus10014458 [exp]	2.6	0.9545
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	4.2	0.9574
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Lus10033914 [exp]	5.5	0.9386
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	5.5	0.9493
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	6.5	0.9389

Compare expression of checked genes

Lus10034696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.