Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 286 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 213 / 2e-63 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 210 / 4e-62 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22400 206 / 1e-60 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G36970 206 / 1e-60 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 205 / 2e-60 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G22340 204 / 9e-60 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 201 / 7e-59 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G05675 199 / 2e-58 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 199 / 5e-58 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003455 [exp] 384 / 1e-129 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 374 / 2e-125 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 367 / 9e-123 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 365 / 4e-122 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015750 [exp] 363 / 2e-121 AT3G02100 298 / 2e-96 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 360 / 5e-120 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 360 / 5e-120 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 357 / 4e-119 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 347 / 2e-115 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091500 [exp] 356 / 8e-119 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 352 / 2e-117 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 341 / 5e-113 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G084900 [exp] 330 / 1e-108 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 311 / 3e-101 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 230 / 7e-70 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.015G071900 [exp] 228 / 2e-69 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.016G021000 [exp] 218 / 4e-65 AT1G22360 561 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.006G023700 [exp] 215 / 3e-64 AT1G22370 476 / 2e-165 UDP-glucosyl transferase 85A5 (.1.2) Potri.002G098400 [exp] 213 / 2e-63 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10034699 pacid=23162887 polypeptide=Lus10034699 locus=Lus10034699.g ID=Lus10034699.BGIv1.0 annot-version=v1.0 ATGCCAACTGCCGAAAGAAAATCAGCACATCTCCTAGTCGTCCCAGCTCCGGGGACCGGCCACGTCAACCCGCTCCTAAAATTCTCCCACAAACTTGCCA ACCACGGCGGAGTCAGAGTCACGGTGGTCAACGACGACTTCATTCACAACAAGGTCATGGCAGCCGCCTCAAAACAGGCCAAGGACGAACACCACAGCTT AGTGAGGCTCGTCGGGATTCCTGACGGCCGAGATCCGGCTAAACTGGGCCGGGAGAAGTTCGGGGAAGGCGCGGAATCCAGATCCAAAGTGATGGCGGGC CACCTGAAGAAGCTGATCGAGGAAATCAATGGTTCGGAGGAAGGCTTGCCGATTAGTTGCGTGGTGAGCGATGGATCCACCGCTTGGGCGCTTGAAATTG GTAGGGAGATGGGGATAAAGTGCGGTGTTGTTTCGCCAGTGGCAGTGATTAATCTTTCGTTGACGCTTCACATTCCGAAACTCATTCAATCTGGAATCTT ATCCCCTCACGGATTGCCGTTAAAGAATGAAGCCATAGTGTTACCAAACCAAGGAGAGCTACCACCATGGCAACCTAACGAGTTACCTTGGCACCATCCA AATCCACAAGTACAGAAGCACTTATTCAAGCAATATACCCTGAAGCAGCTAGCAATCCTACCCCAATGCGACTGGATTCTATCCAACACATTCCCCGAAC TCGAGCCATTTGCCTGCCAATTGAATCCCGACACACTCCCCATCGGTCCACTCCTCCAAACTCCAGACCCAACCCATTTCCACGGCAACTTCTGGGGTGC AGAAGACCCTACTTGCATAACCTGGCTAGACCAGCAATCCCCTGCATCCGTCATATACGTTGCGTTCGGTAGCACCGCGAATATGACCCAGTGTCAGTTC GAAGAACTCGCATTGGGTCTCGAACGATCAGGGAAGCCGTTCTTGTGGGTGGTGAGATCAGACATTGTTGCAGATATTAGGGGCGGAGATGGTGGAAAAC CACAGTTTTTCCCAAGTGGGTTTCTGGAGAGGGTCGTCGTGGACCATGGTGGTCGTGGGAAGATTGTGGAGTGGTGTTCACAAGAGGACGTGTTGGCTCA TCCTTCTACGAGTTGCTTCTTAAGCCACTGCGGATGGAACTCGACGATTGAAGGTGTGAGCTATGGGGTTCCTTTCCTTTGCTGGCCTTACTTTGGAGAC CAGATGTATAACAAGAGGTACATTTGCGAGGTCTGGAAAGTAGGTTTGGGATTGGATCATGCAGATGATGAAAGTGGTAGTAAAGTTGTTACCAGGTTTG AAATTGCAAGAAAGATTCAGAGGTTGATGTGTGATGATGGGATCAAGGCTAATGTAGTTAGGCTGAAAGAGATGGCTGTGAAGAGTTTGAGTCCAGGTGG ATCCTCCTCCACTAATTTACATACCTTTATCCAACAATTGTGTTAG
AA sequence Show only first row Show all	>Lus10034699 pacid=23162887 polypeptide=Lus10034699 locus=Lus10034699.g ID=Lus10034699.BGIv1.0 annot-version=v1.0 MPTAERKSAHLLVVPAPGTGHVNPLLKFSHKLANHGGVRVTVVNDDFIHNKVMAAASKQAKDEHHSLVRLVGIPDGRDPAKLGREKFGEGAESRSKVMAG HLKKLIEEINGSEEGLPISCVVSDGSTAWALEIGREMGIKCGVVSPVAVINLSLTLHIPKLIQSGILSPHGLPLKNEAIVLPNQGELPPWQPNELPWHHP NPQVQKHLFKQYTLKQLAILPQCDWILSNTFPELEPFACQLNPDTLPIGPLLQTPDPTHFHGNFWGAEDPTCITWLDQQSPASVIYVAFGSTANMTQCQF EELALGLERSGKPFLWVVRSDIVADIRGGDGGKPQFFPSGFLERVVVDHGGRGKIVEWCSQEDVLAHPSTSCFLSHCGWNSTIEGVSYGVPFLCWPYFGD QMYNKRYICEVWKVGLGLDHADDESGSKVVTRFEIARKIQRLMCDDGIKANVVRLKEMAVKSLSPGGSSSTNLHTFIQQLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10034699 [exp]	0	1
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10035389 [exp]	6.6	0.9021
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	15.9	0.8730
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	16.5	0.8736
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	22.7	0.8648
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	26.6	0.8533
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	27.3	0.8642
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10041138 [exp]	29.0	0.8644
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	34.4	0.8557
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10040859 [exp]	35.0	0.8444
AT5G08250			Cytochrome P450 superfamily pr...		Lus10013438 [exp]	35.9	0.8495

Compare expression of checked genes

Lus10034699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.