Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07920 724 / 0 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) AT5G63770 424 / 3e-141 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G57690 87 / 3e-18 ATDGK4 diacylglycerol kinase 4 (.1) AT2G18730 87 / 4e-18 ATDGK3 diacylglycerol kinase 3 (.1) AT2G20900 86 / 1e-17 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT4G30340 86 / 2e-17 ATDGK7 diacylglycerol kinase 7 (.1) AT4G28130 85 / 3e-17 DGK6, ATDGK6 diacylglycerol kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021625 [exp] 991 / 0 AT5G07920 1101 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10015742 [exp] 800 / 0 AT5G07920 1053 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10003460 [exp] 792 / 0 AT5G07920 1050 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10012719 [exp] 375 / 1e-122 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10010896 [exp] 375 / 1e-122 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10019987 [exp] 91 / 2e-19 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10015514 [exp] 91 / 2e-19 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 90 / 1e-18 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1) Lus10031612 [exp] 84 / 8e-17 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066300 [exp] 798 / 0 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.007G097900 [exp] 389 / 4e-128 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 386 / 7e-127 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.006G174700 [exp] 91 / 3e-19 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.018G096700 [exp] 90 / 4e-19 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.013G148500 [exp] 84 / 6e-17 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 80 / 1e-15 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain CL0006 [flax] [poplar] C1 PF00130 [flax] [poplar] C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain)
Representative CDS sequence Show only first row Show all	>Lus10034701 pacid=23162777 polypeptide=Lus10034701 locus=Lus10034701.g ID=Lus10034701.BGIv1.0 annot-version=v1.0 ATGGACGACGATAGAGAAATTGGGATTCTGTTCCCTGGTTGGAACACCAAGAATCCAACTGAATCCTATGTTTTCATGCTGTCATGCTTTCTTGCTGCTT TAGTTGGGATTTTGACTATCGCTTACACCAGTGTCCAATGGAGAAGAAATATCAATCTGAGTTGGATGAAGGCTATAGCTAGATCGAAGAAAAATCCAAA GACGAGGGACAAGGTTCCTGCAGCCCAACATACATGGGTGCTTGAATCCGTATCTCGTGGGAAGAATCTGAATTGTTGTGTTTGCTTAAAGTCCATGTCC CCTTCTCAAACTCTTGGCCCTATGGTGGCATCGGACAGTTTCATTCACTGTTGCAGTATTTGTGCTGCAGCATCTCACCTAGGATGCTCCAGCAATGCAC CAAAGGACTGCAAGTGTGTTTCTATGGTTGGATGTGATACTGTCATGCATCAATGGGCTGTTCGGTGGACTGAGATCATGGATCAACCTGATGAAACTTC CTTTTGTAGTTATTGCGAAGAACCATGTAGTGGACCTTTCCTTGGTGGATCGCCAATTTGGTGTTGCTTTTGGTGTCAAAGACTTGTACATGTTGATTGC CATAGTAGTATGTCCAGTGAAACTGGTGATATTTGTGATCTAGGTACTTTTAGAAGGTTGATTGTATCACCCATGTATGTTCGTGAGCTTCACCGGAATT CACCAGGTGGATTTTTGAGTTCAATCACACATGGGGCAAATGAAATTGCTTCTTCAGTGCGTGCAACTATCAGGAGTCAAAGCAAGAAGCACAAGCATGG TAACAAAAATTCTGTTCAAACTGGAGATAGTGGTAGCACTGGTGATCCGTCCTCTGAGAGCATACCTGACCACCATCCTTCTCCAAATGGTTGCGATGGT GTGGAGGATAGCTCTCCTGGTAGCATGAATGTGGGGAGTCCTCTCCATGCTGGTGTAAATGTGGATAACAAGCTCGAATCAAGACCTAGTTTCAAAAGGA GTGGCTCGTTTAACCAGAAGGATGAATCACATGTATTAAGGATGAAACAGAAATATGAGATAATCGATCTGCCATCTGATGCGCGACCCCTGCTTGTTTT TATCAACCAGAAGAGTGGTGCTAGGCGTGGTGACTCCCTTAAGCAACGACTGAACTTGCTTCTGAATCCTGTTCAGGTATTTGAATTGAGTTCAACACAG GGGCCAGAGGTTGGACTTTACCTTTTCAGGAAGGTACCTCACTTCAGAATTCTTGTATGCGGAGGAGATGGCACGATGGGCTGGGTTCTTAATGCTATAG ACAAGCTAAATTTTGTATCTCCTCCACCTGTAGCTACTCTTCCTGCTGGAACTGGAAATGATCTGGCCAGAGTACTTTCCTGGGGAAGTGGTTTGGGGGC ATTGGAAAAACAAGGAGGTCTCTGCACATTATTGCAGGATATTGAACATGCTGCTGTAACCGTCCTTGATAGGTGGCAGGTGGGGATTATCAACAGTCAG CGGAGACAACTCCAATCACCAAAATTTATGAACAATTATCTTGGCAAGTGA
AA sequence Show only first row Show all	>Lus10034701 pacid=23162777 polypeptide=Lus10034701 locus=Lus10034701.g ID=Lus10034701.BGIv1.0 annot-version=v1.0 MDDDREIGILFPGWNTKNPTESYVFMLSCFLAALVGILTIAYTSVQWRRNINLSWMKAIARSKKNPKTRDKVPAAQHTWVLESVSRGKNLNCCVCLKSMS PSQTLGPMVASDSFIHCCSICAAASHLGCSSNAPKDCKCVSMVGCDTVMHQWAVRWTEIMDQPDETSFCSYCEEPCSGPFLGGSPIWCCFWCQRLVHVDC HSSMSSETGDICDLGTFRRLIVSPMYVRELHRNSPGGFLSSITHGANEIASSVRATIRSQSKKHKHGNKNSVQTGDSGSTGDPSSESIPDHHPSPNGCDG VEDSSPGSMNVGSPLHAGVNVDNKLESRPSFKRSGSFNQKDESHVLRMKQKYEIIDLPSDARPLLVFINQKSGARRGDSLKQRLNLLLNPVQVFELSSTQ GPEVGLYLFRKVPHFRILVCGGDGTMGWVLNAIDKLNFVSPPPVATLPAGTGNDLARVLSWGSGLGALEKQGGLCTLLQDIEHAAVTVLDRWQVGIINSQ RRQLQSPKFMNNYLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034701 [exp]	0	1
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028126 [exp]	3.2	0.7834
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004802 [exp]	5.5	0.7363
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	8.2	0.7486
AT3G01930			Major facilitator superfamily ...		Lus10032034 [exp]	12.1	0.6591
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	13.0	0.6933
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	13.4	0.7161
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	16.2	0.6839
AT4G24015			RING/U-box superfamily protein...		Lus10023055 [exp]	18.3	0.6659
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	19.5	0.6602
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	26.3	0.6722

Compare expression of checked genes

Lus10034701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.